ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys01tis19
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP2213_tis/sys01tis19/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
8,056
Cells represented in this release
🧬
Total Genes
17,308
Genes represented in the source matrix
🔷
Cell Types
14
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Melanocytes | 747 | 9.272591857001% | — | — | — |
| Glial cells | 712 | 8.8381330685204% | — | — | — |
| Rod cells | 425 | 5.2755710029791% | — | — | — |
| Muller cells | 354 | 4.3942403177756% | — | — | — |
| Cone cells | 254 | 3.1529294935452% | — | — | — |
| Bipolar cells | 250 | 3.103277060576% | — | — | — |
| Amacrine cells | 200 | 2.4826216484608% | — | — | — |
| Ganglion cells | 79 | 0.98063555114201% | — | — | — |
| Macrophages | 373 | 4.6300893743793% | — | — | — |
| T cells | 75 | 0.93098311817279% | — | — | — |
| Retinal pigmentary epithelial cells | 1,797 | 22.30635551142% | — | — | — |
| Fibroblasts | 1,346 | 16.708043694141% | — | — | — |
| Smooth muscle cells | 1,358 | 16.857000993049% | — | — | — |
| Endothelial cells | 86 | 1.0675273088381% | — | — | — |
14 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Retinal pigmentary epithelial cells | 1797 | 22.3064 | Epithelial cells | #FF00FF |
| celltype | Smooth muscle cells | 1358 | 16.857 | Muscle cells | #26A69A |
| celltype | Fibroblasts | 1346 | 16.708 | Stromal cells | #F44336 |
| celltype | Melanocytes | 747 | 9.2726 | Neural cells | #5C6BC0 |
| celltype | Glial cells | 712 | 8.8381 | Neural cells | #BA55D3 |
| celltype | Rod cells | 425 | 5.2756 | Neural cells | #FF00FF |
| celltype | Macrophages | 373 | 4.6301 | Immune cells | #2E7D32 |
| celltype | Muller cells | 354 | 4.3942 | Neural cells | #483D8B |
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