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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics Tissue › sys05tis05

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP2213 Tissue: sys05tis05 Generated: 2026-08-08 07:48

📁 analysis_results_v2/SP2213_tis/sys05tis05/releases/r20260808-v4/modules/stats

Scope: post_qc_descriptive / Source: validated immutable release

Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.

🔬

9,115

Total Cells

🧬

17,308

Total Genes

🔷

8

Cell Types

🫀

1

Tissues

📦

N/A

Samples

N/A: Not exported by the post-QC descriptive statistics pipeline.

📊

N/A

Clusters

N/A: Not exported by the post-QC descriptive statistics pipeline.

⚡

N/A

Mito %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🧪

N/A

Ribo %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🚫

N/A

Cells Filtered

N/A: Validated Raw Count Thresholds Not Available.

✅

N/A

Pass Rate

N/A: Validated Raw Count Thresholds Not Available.

📋 Overview 📊 QC Metrics 🗺️ UMAP 🧩 Composition 🧬 Markers 📈 Gene Stats 📁 Data 2

📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬

Total Cells

9,115

Cells represented in this release

🧬

Total Genes

17,308

Genes represented in the source matrix

🔷

Cell Types

8

Annotated cell-type groups

🫀

Tissues

1

Annotated tissue groups

📦

Samples

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Clusters

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Median Genes/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

📈

Median Counts/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

⚡

Mito %

N/A

Not exported by the post-QC descriptive statistics pipeline.

🧪

Ribo %

N/A

Not exported by the post-QC descriptive statistics pipeline.

✅

Cells Passing

N/A

Validated Raw Count Thresholds Not Available.

🚫

Cells Filtered

N/A

Validated Raw Count Thresholds Not Available.

✅

Pass Rate

N/A

Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

🔷 Cell Type / Cluster Breakdown

Name	Cells	%	Med Genes	Med Counts	Med Mito%
Natural killer T cells	639	7.0104223806912%	—	—	—
Macrophages	492	5.3976961053209%	—	—	—
Monocytes	197	2.161272627537%	—	—	—
Basal cells	46	0.50466264399342%	—	—	—
Cycling basal cells	33	0.36204059243006%	—	—	—
Other stromal cells	5,144	56.434448710916%	—	—	—
Smooth muscle cells	1,781	19.53922106418%	—	—	—
Endothelial cells	783	8.5902358749314%	—	—	—

8 groups

📊

QC MetricsInteractive boxplots and scatter plots

📐 Distribution Summary

Metric	Min	Q1	Median	Mean	Q3	Max	Std

🎻 Genes/Cell BOXPLOT

🎻 Counts/Cell BOXPLOT

🎻 Mito % BOXPLOT

🎻 Ribo % BOXPLOT

🔬 Genes vs Counts SCATTER

🗺️

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

🗺️ UMAP by Group INTERACTIVE

🧩

Cell CompositionCell type proportions overall and per sample

🥧 Overall PIE

📊 Per-sample STACKED BAR

🧬

Marker GenesTop markers per cluster and expression heatmap

🔥 Expression Heatmap Z-SCORE

📈

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

🏆 Top Expressed BAR

📁

Data FilesDownload QC data tables

📋 Available Files

File	Description	Action
composition.csv	Composition	📥 Download
gene_stats.csv	Gene Stats	📥 Download

📋 Preview: composition.csv

grouping	group	count	pct	category	color
celltype	Other stromal cells	5144	56.4344	Stromal cells	#008B8B
celltype	Smooth muscle cells	1781	19.5392	Muscle cells	#26A69A
celltype	Endothelial cells	783	8.5902	Endothelial cells	#FF8A65
celltype	Natural killer T cells	639	7.0104	Immune cells	#FF1493
celltype	Macrophages	492	5.3977	Immune cells	#2E7D32
celltype	Monocytes	197	2.1613	Immune cells	#29B6F6
celltype	Basal cells	46	0.5047	Epithelial cells	#78909C
celltype	Cycling basal cells	33	0.362	Epithelial cells	#ADD8E6

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