ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP239
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
661,961
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
89
Annotated cell-type groups
🫀
Tissues
18
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 17,954 | 2.7122443769346% | — | — | — |
| Inhibitory neurons | 11,822 | 1.7859058162037% | — | — | — |
| Oligodendrocytes | 3,699 | 0.55879424920803% | — | — | — |
| Astrocytes | 1,742 | 0.26315749719394% | — | — | — |
| Enteric glial cells | 1,352 | 0.20424163961321% | — | — | — |
| Oligodendrocyte progenitor cells | 1,201 | 0.18143062808836% | — | — | — |
| Schwann cells | 348 | 0.052571072918193% | — | — | — |
| Purkinje cells | 9 | 0.0013595967134015% | — | — | — |
| T cells | 72,188 | 10.905174171892% | — | — | — |
| B cells | 28,445 | 4.2970809458563% | — | — | — |
| Thymocytes | 25,076 | 3.7881385761397% | — | — | — |
| Neutrophils | 22,992 | 3.4733164038365% | — | — | — |
| Macrophages | 16,732 | 2.527641356515% | — | — | — |
| Monocytes | 16,592 | 2.5064920743065% | — | — | — |
| Metamyelocytes | 9,261 | 1.3990250180902% | — | — | — |
| Plasma B cells | 5,421 | 0.8189304203722% | — | — | — |
| Cycling T cells | 5,154 | 0.77859571787462% | — | — | — |
| Dendritic cells | 5,030 | 0.75986349648997% | — | — | — |
| Erythroid cells | 4,726 | 0.7139393408373% | — | — | — |
| Myelocytes | 4,540 | 0.68584100876033% | — | — | — |
| Promyelocytes | 4,388 | 0.662878930934% | — | — | — |
| Mast cells | 978 | 0.1477428428563% | — | — | — |
| Platelets | 831 | 0.12553609653741% | — | — | — |
| Microglia | 799 | 0.12070197488976% | — | — | — |
| Cycling B cells | 682 | 0.10302721761554% | — | — | — |
| Kupffer cells | 678 | 0.10242295240958% | — | — | — |
| Innate lymphoid cells | 593 | 0.089582316783013% | — | — | — |
| Common lymphoid progenitors | 591 | 0.089280184180035% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 469 | 0.070850095398369% | — | — | — |
| Basophils | 424 | 0.064052111831362% | — | — | — |
| Common myeloid progenitors | 208 | 0.031421790709725% | — | — | — |
| Hematopoietic stem and progenitor cells | 46 | 0.0069490498684968% | — | — | — |
| Urothelial cells | 26,688 | 4.03165745414% | — | — | — |
| Proximal tubule cells | 21,640 | 3.2690747642233% | — | — | — |
| Keratinocytes | 21,308 | 3.2189207521289% | — | — | — |
| Epididymal epithelial cells | 20,713 | 3.1290363027429% | — | — | — |
| Hepatocytes | 13,685 | 2.0673423358778% | — | — | — |
| Acinar cells | 12,536 | 1.8937671554669% | — | — | — |
| Alveolar type 2 cells | 11,692 | 1.7662671970101% | — | — | — |
| Club cells | 11,684 | 1.7650586665982% | — | — | — |
| Enterocytes | 9,949 | 1.5029586335147% | — | — | — |
| Leydig cells | 8,595 | 1.2984148612985% | — | — | — |
| Chief cells | 7,916 | 1.1958408425874% | — | — | — |
| Mesothelial cells | 7,407 | 1.1189480951295% | — | — | — |
| Mucous cells | 7,015 | 1.0597301049458% | — | — | — |
| Epithelial cells | 6,639 | 1.0029291755859% | — | — | — |
| Ciliated cells | 5,797 | 0.87573134973208% | — | — | — |
| Pancreas ductal cells | 4,891 | 0.738865280583% | — | — | — |
| Goblet cells | 4,629 | 0.69928590959286% | — | — | — |
| Ascending loop of Henle cells | 3,598 | 0.54353655275764% | — | — | — |
| Principal cells | 3,192 | 0.48220363435308% | — | — | — |
| Gastric stem cells | 2,580 | 0.38975105784178% | — | — | — |
| Pancreas islet cells | 2,549 | 0.38506800249562% | — | — | — |
| Parietal cells | 2,467 | 0.37268056577351% | — | — | — |
| Endocrine cells | 1,960 | 0.29608995091856% | — | — | — |
| Basal cells | 1,939 | 0.29291755858729% | — | — | — |
| Distal convoluted tubule cells | 1,740 | 0.26285536459097% | — | — | — |
| Alveolar type 1 cells | 1,599 | 0.24155501608101% | — | — | — |
| Intercalated cells | 1,396 | 0.21088855687873% | — | — | — |
| Enteroendocrine cells | 959 | 0.14487258312801% | — | — | — |
| Parietal epithelial cells | 757 | 0.11435719022722% | — | — | — |
| Chromaffin cells | 457 | 0.069037299780501% | — | — | — |
| Cycling gastric epithelial cell | 328 | 0.049549746888412% | — | — | — |
| Connecting tubule cells | 316 | 0.047736951270543% | — | — | — |
| Medullary thymus epithelial cells | 269 | 0.040636835100557% | — | — | — |
| Efferent ductule epithelial cells | 224 | 0.03383885153355% | — | — | — |
| Choroid plexus | 197 | 0.029760061393345% | — | — | — |
| Colonic stem cells | 156 | 0.023566343032293% | — | — | — |
| Parathyroid cells | 118 | 0.017825823575709% | — | — | — |
| Podocytes | 109 | 0.016466226862308% | — | — | — |
| Sebocytes | 89 | 0.013444900832526% | — | — | — |
| Neuroendocrine cells | 77 | 0.011632105214658% | — | — | — |
| Melanocytes | 29 | 0.0043809227431828% | — | — | — |
| Fibroblasts | 43,840 | 6.6227466572804% | — | — | — |
| Adipocytes | 27,193 | 4.107945936392% | — | — | — |
| Sertoli cells | 9,719 | 1.4682133841722% | — | — | — |
| Adipocyte progenitor cells | 8,483 | 1.2814954355317% | — | — | — |
| Pericytes | 2,673 | 0.40380022388026% | — | — | — |
| Stellate cells | 2,484 | 0.37524869289883% | — | — | — |
| Peritubular myoid cells | 1,022 | 0.15438976012182% | — | — | — |
| Smooth muscle cells | 8,305 | 1.2546056338666% | — | — | — |
| Cardiomyocytes | 1,220 | 0.18430088781665% | — | — | — |
| Pacemaker cells | 217 | 0.032781387423126% | — | — | — |
| Skeletal myonuclei | 156 | 0.023566343032293% | — | — | — |
| Spermatids | 13,701 | 2.0697593967016% | — | — | — |
| Spermatogonia | 9,925 | 1.4993330422789% | — | — | — |
| Spermatocytes | 6,777 | 1.0237763251914% | — | — | — |
| Spermatozoa | 2,523 | 0.3811402786569% | — | — | — |
| Endothelial cells | 28,863 | 4.3602266598788% | — | — | — |
89 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 72188 | 10.9052 | Immune cells | #DC143C |
| celltype | Fibroblasts | 43840 | 6.6227 | Stromal cells | #008000 |
| celltype | Endothelial cells | 28863 | 4.3602 | Endothelial cells | #00FFFF |
| celltype | B cells | 28445 | 4.2971 | Immune cells | #800000 |
| celltype | Adipocytes | 27193 | 4.1079 | Stromal cells | #98FB98 |
| celltype | Urothelial cells | 26688 | 4.0317 | Epithelial cells | #800080 |
| celltype | Thymocytes | 25076 | 3.7881 | Immune cells | #E68FAC |
| celltype | Neutrophils | 22992 | 3.4733 | Immune cells | #FF69B4 |
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