ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
196,720
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
30
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 43,911 | 22.321573810492% | — | — | — |
| Thymocytes | 25,076 | 12.747051647011% | — | — | — |
| Neutrophils | 22,841 | 11.610919072794% | — | — | — |
| Monocytes | 16,592 | 8.434322895486% | — | — | — |
| B cells | 16,301 | 8.2863969093127% | — | — | — |
| Metamyelocytes | 9,261 | 4.7077063847092% | — | — | — |
| Macrophages | 6,405 | 3.255896705978% | — | — | — |
| Cycling T cells | 4,896 | 2.4888165921106% | — | — | — |
| Erythroid cells | 4,726 | 2.402399349329% | — | — | — |
| Myelocytes | 4,540 | 2.3078487189915% | — | — | — |
| Promyelocytes | 4,388 | 2.2305815372102% | — | — | — |
| Dendritic cells | 3,728 | 1.8950793005287% | — | — | — |
| Plasma B cells | 1,635 | 0.83113054087027% | — | — | — |
| Platelets | 831 | 0.42242781618544% | — | — | — |
| Common lymphoid progenitors | 591 | 0.30042700284669% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 469 | 0.23840992273282% | — | — | — |
| Basophils | 424 | 0.2155347702318% | — | — | — |
| Common myeloid progenitors | 208 | 0.10573403822692% | — | — | — |
| Mast cells | 135 | 0.06862545750305% | — | — | — |
| Hematopoietic stem and progenitor cells | 46 | 0.023383489223261% | — | — | — |
| Epithelial cells | 6,639 | 3.3748474989833% | — | — | — |
| Mesothelial cells | 3,014 | 1.5321268808459% | — | — | — |
| Medullary thymus epithelial cells | 269 | 0.13674257828386% | — | — | — |
| Parathyroid cells | 118 | 0.059983733224888% | — | — | — |
| Adipocytes | 5,895 | 2.9966449776332% | — | — | — |
| Fibroblasts | 2,620 | 1.3318422122814% | — | — | — |
| Cardiomyocytes | 1,220 | 0.62017080113867% | — | — | — |
| Smooth muscle cells | 318 | 0.16165107767385% | — | — | — |
| Pacemaker cells | 217 | 0.11030906872712% | — | — | — |
| Endothelial cells | 9,406 | 4.7814152094347% | — | — | — |
30 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 43911 | 22.3216 | Immune cells | #DC143C |
| celltype | Thymocytes | 25076 | 12.7471 | Immune cells | #E68FAC |
| celltype | Neutrophils | 22841 | 11.6109 | Immune cells | #FF69B4 |
| celltype | Monocytes | 16592 | 8.4343 | Immune cells | #D02090 |
| celltype | B cells | 16301 | 8.2864 | Immune cells | #800000 |
| celltype | Endothelial cells | 9406 | 4.7814 | Endothelial cells | #00FFFF |
| celltype | Metamyelocytes | 9261 | 4.7077 | Immune cells | #78909C |
| celltype | Epithelial cells | 6639 | 3.3748 | Epithelial cells | #8A2BE2 |
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