ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
134,752
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
32
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 1,352 | 1.0033246259796% | — | — | — |
| T cells | 24,540 | 18.211232486345% | — | — | — |
| B cells | 11,426 | 8.4792804559487% | — | — | — |
| Plasma B cells | 3,786 | 2.8096057943481% | — | — | — |
| Macrophages | 1,479 | 1.0975718356685% | — | — | — |
| Mast cells | 720 | 0.53431488957492% | — | — | — |
| Cycling B cells | 682 | 0.50611493706958% | — | — | — |
| Kupffer cells | 678 | 0.50314652101639% | — | — | — |
| Dendritic cells | 605 | 0.44897292804559% | — | — | — |
| Innate lymphoid cells | 593 | 0.44006767988601% | — | — | — |
| Cycling T cells | 258 | 0.19146283543101% | — | — | — |
| Neutrophils | 78 | 0.057884113037283% | — | — | — |
| Hepatocytes | 13,685 | 10.15569342199% | — | — | — |
| Acinar cells | 12,536 | 9.30301591071% | — | — | — |
| Enterocytes | 9,949 | 7.3831928283068% | — | — | — |
| Chief cells | 7,916 | 5.874495369271% | — | — | — |
| Mucous cells | 7,015 | 5.205859653289% | — | — | — |
| Pancreas ductal cells | 4,891 | 3.629630729043% | — | — | — |
| Goblet cells | 4,629 | 3.4351994775588% | — | — | — |
| Gastric stem cells | 2,580 | 1.9146283543101% | — | — | — |
| Pancreas islet cells | 2,549 | 1.8916231298979% | — | — | — |
| Parietal cells | 2,467 | 1.8307706008074% | — | — | — |
| Endocrine cells | 1,960 | 1.4545238660651% | — | — | — |
| Enteroendocrine cells | 959 | 0.71167774875327% | — | — | — |
| Chromaffin cells | 457 | 0.33914153407742% | — | — | — |
| Cycling gastric epithelial cell | 328 | 0.24341011636191% | — | — | — |
| Colonic stem cells | 156 | 0.11576822607457% | — | — | — |
| Fibroblasts | 5,744 | 4.2626454523866% | — | — | — |
| Stellate cells | 2,484 | 1.8433863690335% | — | — | — |
| Pericytes | 906 | 0.67234623604844% | — | — | — |
| Smooth muscle cells | 1,919 | 1.4240976015198% | — | — | — |
| Endothelial cells | 5,425 | 4.0259142721444% | — | — | — |
32 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 24540 | 18.2112 | Immune cells | #DC143C |
| celltype | Hepatocytes | 13685 | 10.1557 | Epithelial cells | #48D1CC |
| celltype | Acinar cells | 12536 | 9.303 | Epithelial cells | #000080 |
| celltype | B cells | 11426 | 8.4793 | Immune cells | #800000 |
| celltype | Enterocytes | 9949 | 7.3832 | Epithelial cells | #483D8B |
| celltype | Chief cells | 7916 | 5.8745 | Epithelial cells | #4CAF50 |
| celltype | Mucous cells | 7015 | 5.2059 | Epithelial cells | #4169E1 |
| celltype | Fibroblasts | 5744 | 4.2626 | Stromal cells | #008000 |
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