ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
75,647
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
17
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 1,174 | 1.551945219242% | — | — | — |
| T cells | 399 | 0.52744986582416% | — | — | — |
| B cells | 57 | 0.075349980832022% | — | — | — |
| Urothelial cells | 26,688 | 35.279654183246% | — | — | — |
| Proximal tubule cells | 21,640 | 28.606554126403% | — | — | — |
| Ascending loop of Henle cells | 3,598 | 4.7563022988354% | — | — | — |
| Principal cells | 3,192 | 4.2195989265933% | — | — | — |
| Distal convoluted tubule cells | 1,740 | 2.3001573096091% | — | — | — |
| Intercalated cells | 1,396 | 1.8454135656404% | — | — | — |
| Mesothelial cells | 1,320 | 1.744946924531% | — | — | — |
| Parietal epithelial cells | 757 | 1.0007006226288% | — | — | — |
| Connecting tubule cells | 316 | 0.41772971829683% | — | — | — |
| Podocytes | 109 | 0.14409031422264% | — | — | — |
| Fibroblasts | 8,660 | 11.447909368514% | — | — | — |
| Adipocytes | 154 | 0.20357714119529% | — | — | — |
| Smooth muscle cells | 3,427 | 4.5302523563393% | — | — | — |
| Endothelial cells | 1,020 | 1.3483680780467% | — | — | — |
17 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Urothelial cells | 26688 | 35.2797 | Epithelial cells | #800080 |
| celltype | Proximal tubule cells | 21640 | 28.6066 | Epithelial cells | #EE82EE |
| celltype | Fibroblasts | 8660 | 11.4479 | Stromal cells | #008000 |
| celltype | Ascending loop of Henle cells | 3598 | 4.7563 | Epithelial cells | #0000FF |
| celltype | Smooth muscle cells | 3427 | 4.5303 | Muscle cells | #DEB887 |
| celltype | Principal cells | 3192 | 4.2196 | Epithelial cells | #9932CC |
| celltype | Distal convoluted tubule cells | 1740 | 2.3002 | Epithelial cells | #6A5ACD |
| celltype | Intercalated cells | 1396 | 1.8454 | Epithelial cells | #40E0D0 |
First 8 rows