ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys02tis04
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239_tis/sys02tis04/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
35,119
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
14
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 8,630 | 24.57359264216% | — | — | — |
| Neutrophils | 8,595 | 24.473931490077% | — | — | — |
| Monocytes | 4,811 | 13.699137219169% | — | — | — |
| B cells | 4,508 | 12.83635638828% | — | — | — |
| Macrophages | 4,358 | 12.409237165067% | — | — | — |
| Erythroid cells | 1,970 | 5.6094991315242% | — | — | — |
| Plasma B cells | 312 | 0.88840798428201% | — | — | — |
| Dendritic cells | 292 | 0.83145875452035% | — | — | — |
| Mast cells | 112 | 0.31891568666534% | — | — | — |
| Hematopoietic stem and progenitor cells | 32 | 0.091118767618668% | — | — | — |
| Cycling T cells | 29 | 0.082576383154418% | — | — | — |
| Platelets | 10 | 0.028474614880834% | — | — | — |
| Fibroblasts | 339 | 0.96528944446026% | — | — | — |
| Endothelial cells | 1,121 | 3.1920043281415% | — | — | — |
14 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 8630 | 24.5736 | Immune cells | #DC143C |
| celltype | Neutrophils | 8595 | 24.4739 | Immune cells | #FF69B4 |
| celltype | Monocytes | 4811 | 13.6991 | Immune cells | #D02090 |
| celltype | B cells | 4508 | 12.8364 | Immune cells | #800000 |
| celltype | Macrophages | 4358 | 12.4092 | Immune cells | #E9967A |
| celltype | Erythroid cells | 1970 | 5.6095 | Immune cells | #FF6347 |
| celltype | Endothelial cells | 1121 | 3.192 | Endothelial cells | #00FFFF |
| celltype | Fibroblasts | 339 | 0.9653 | Stromal cells | #008000 |
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