ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP239_tis/sys05tis07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
29,853
Cells represented in this release
🧬
Total Genes
15,892
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 1,352 | 4.5288580712156% | — | — | — |
| T cells | 5,939 | 19.894147991827% | — | — | — |
| B cells | 4,514 | 15.120758382742% | — | — | — |
| Plasma B cells | 3,174 | 10.632097276656% | — | — | — |
| Macrophages | 1,058 | 3.5440324255519% | — | — | — |
| Cycling B cells | 362 | 1.2126084480622% | — | — | — |
| Dendritic cells | 178 | 0.5962549827488% | — | — | — |
| Cycling T cells | 176 | 0.58955548856061% | — | — | — |
| Innate lymphoid cells | 173 | 0.57950624727833% | — | — | — |
| Mast cells | 91 | 0.30482698556259% | — | — | — |
| Neutrophils | 78 | 0.26128027333936% | — | — | — |
| Enterocytes | 2,538 | 8.5016581248116% | — | — | — |
| Goblet cells | 1,161 | 3.8890563762436% | — | — | — |
| Colonic stem cells | 156 | 0.52256054667873% | — | — | — |
| Fibroblasts | 4,981 | 16.685090275684% | — | — | — |
| Pericytes | 787 | 2.6362509630523% | — | — | — |
| Smooth muscle cells | 867 | 2.9042307305798% | — | — | — |
| Endothelial cells | 2,268 | 7.5972264094061% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 5939 | 19.8941 | Immune cells | #DC143C |
| celltype | Fibroblasts | 4981 | 16.6851 | Stromal cells | #008000 |
| celltype | B cells | 4514 | 15.1208 | Immune cells | #800000 |
| celltype | Plasma B cells | 3174 | 10.6321 | Immune cells | #FFB6C1 |
| celltype | Enterocytes | 2538 | 8.5017 | Epithelial cells | #483D8B |
| celltype | Endothelial cells | 2268 | 7.5972 | Endothelial cells | #00FFFF |
| celltype | Enteric glial cells | 1352 | 4.5289 | Neural cells | #800080 |
| celltype | Goblet cells | 1161 | 3.8891 | Epithelial cells | #00CED1 |
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