ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP301
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP301/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
189,830
Cells represented in this release
🧬
Total Genes
14,862
Genes represented in the source matrix
🔷
Cell Types
67
Annotated cell-type groups
🫀
Tissues
25
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Microglia | 1,663 | 0.87604698941158% | — | — | — |
| Inhibitory neurons | 596 | 0.3139651266923% | — | — | — |
| Ganglion cells | 543 | 0.2860454090502% | — | — | — |
| Oligodendrocytes | 527 | 0.27761681504504% | — | — | — |
| Astrocytes | 505 | 0.26602749828794% | — | — | — |
| Melanocytes | 265 | 0.1395985882105% | — | — | — |
| Oligodendrocyte progenitor cells | 227 | 0.11958067744824% | — | — | — |
| Excitatory neurons | 110 | 0.057946583785492% | — | — | — |
| Schwann cells | 90 | 0.047410841279039% | — | — | — |
| Cone cells | 79 | 0.04161618290049% | — | — | — |
| Bipolar cells | 47 | 0.024758994890165% | — | — | — |
| Neutrophils | 28,647 | 15.090870779118% | — | — | — |
| T cells | 25,051 | 13.196544276458% | — | — | — |
| Macrophages | 24,506 | 12.909445293157% | — | — | — |
| Monocytes | 17,286 | 9.1060422483275% | — | — | — |
| Erythroid cells | 8,219 | 4.3296633830269% | — | — | — |
| B cells | 4,526 | 2.3842385292103% | — | — | — |
| Plasma B cells | 3,194 | 1.6825580782806% | — | — | — |
| Kupffer cells | 1,814 | 0.9555918453353% | — | — | — |
| Natural killer cells | 681 | 0.35874203234473% | — | — | — |
| Dendritic cells | 640 | 0.3371437602065% | — | — | — |
| Platelets | 266 | 0.14012537533583% | — | — | — |
| Goblet cells | 218 | 0.11483959332034% | — | — | — |
| Cycling T cells | 212 | 0.1116788705684% | — | — | — |
| Pancreas islet cells | 206 | 0.10851814781647% | — | — | — |
| Hematopoietic stem and progenitor cells | 107 | 0.056366222409524% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 66 | 0.034767950271295% | — | — | — |
| Keratinocytes | 23,536 | 12.398461781594% | — | — | — |
| Cycling epithelial cells | 4,791 | 2.5238371174209% | — | — | — |
| Proximal tubule cells | 3,285 | 1.7304957066849% | — | — | — |
| Enterocytes | 2,057 | 1.0836011167887% | — | — | — |
| Alveolar type 2 cells | 1,188 | 0.62582310488332% | — | — | — |
| Acinar cells | 1,105 | 0.58209977348154% | — | — | — |
| Pancreas ductal cells | 488 | 0.25707211715746% | — | — | — |
| Hepatocytes | 465 | 0.24495601327504% | — | — | — |
| Urothelial cells | 411 | 0.21650950850761% | — | — | — |
| Alveolar type 1 cells | 350 | 0.18437549386293% | — | — | — |
| Ependymal cells | 189 | 0.099562766685982% | — | — | — |
| Glandular cells | 178 | 0.093768108307433% | — | — | — |
| Basal cells | 148 | 0.077964494547753% | — | — | — |
| Choroid plexus | 74 | 0.038982247273877% | — | — | — |
| Connecting tubule cells | 47 | 0.024758994890165% | — | — | — |
| Cholangiocytes | 39 | 0.020544697887584% | — | — | — |
| Ciliated cells | 37 | 0.019491123636938% | — | — | — |
| Serous cells | 22 | 0.011589316757098% | — | — | — |
| Neuroendocrine cells | 18 | 0.0094821682558078% | — | — | — |
| Fibroblasts | 5,316 | 2.8004003582152% | — | — | — |
| Adipocytes | 1,034 | 0.54469788758363% | — | — | — |
| Stellate cells | 928 | 0.48885845229943% | — | — | — |
| Other stromal cells | 496 | 0.26128641416004% | — | — | — |
| Pericytes | 447 | 0.23547384501923% | — | — | — |
| Mesothelial cells | 268 | 0.14117894958647% | — | — | — |
| Smooth muscle cells | 1,350 | 0.71116261918559% | — | — | — |
| Satellite cells | 183 | 0.096402043934046% | — | — | — |
| Type II myonuclei | 86 | 0.045303692777749% | — | — | — |
| Skeletal myonuclei | 50 | 0.026339356266133% | — | — | — |
| Cardiomyocytes | 23 | 0.012116103882421% | — | — | — |
| Type I myonuclei | 5 | 0.0026339356266133% | — | — | — |
| Spermatocytes | 2,816 | 1.4834325449086% | — | — | — |
| Spermatozoa | 1,329 | 0.70010008955381% | — | — | — |
| Spermatids | 1,162 | 0.61212663962493% | — | — | — |
| Spermatogonia | 260 | 0.13696465258389% | — | — | — |
| Endothelial cells | 13,150 | 6.9272506979929% | — | — | — |
| Ascending loop of Henle cells | 1,007 | 0.53047463519992% | — | — | — |
| Intercalated cells | 657 | 0.34609914133699% | — | — | — |
| Principal cells | 386 | 0.20333983037455% | — | — | — |
| Colonic stem cells | 158 | 0.08323236580098% | — | — | — |
67 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Neutrophils | 28647 | 15.0909 | Immune cells | #FF7043 |
| celltype | T cells | 25051 | 13.1965 | Immune cells | #E91E63 |
| celltype | Macrophages | 24506 | 12.9094 | Immune cells | #42A5F5 |
| celltype | Keratinocytes | 23536 | 12.3985 | Epithelial cells | #4CAF50 |
| celltype | Monocytes | 17286 | 9.106 | Immune cells | #2E7D32 |
| celltype | Endothelial cells | 13150 | 6.9273 | Endothelial cells | #D4E157 |
| celltype | Erythroid cells | 8219 | 4.3297 | Immune cells | #EF5350 |
| celltype | Fibroblasts | 5316 | 2.8004 | Stromal cells | #FF8A65 |
First 8 rows