ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP301_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
23,550
Cells represented in this release
🧬
Total Genes
14,862
Genes represented in the source matrix
🔷
Cell Types
22
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Schwann cells | 90 | 0.38216560509554% | — | — | — |
| T cells | 5,754 | 24.433121019108% | — | — | — |
| Kupffer cells | 1,814 | 7.7027600849257% | — | — | — |
| Monocytes | 1,341 | 5.6942675159236% | — | — | — |
| Macrophages | 1,167 | 4.9554140127389% | — | — | — |
| Plasma B cells | 1,139 | 4.8365180467091% | — | — | — |
| Dendritic cells | 349 | 1.4819532908705% | — | — | — |
| Pancreas islet cells | 206 | 0.87473460721868% | — | — | — |
| Goblet cells | 170 | 0.72186836518047% | — | — | — |
| Cycling epithelial cells | 4,791 | 20.343949044586% | — | — | — |
| Enterocytes | 2,057 | 8.7346072186837% | — | — | — |
| Acinar cells | 1,105 | 4.692144373673% | — | — | — |
| Pancreas ductal cells | 488 | 2.072186836518% | — | — | — |
| Hepatocytes | 465 | 1.9745222929936% | — | — | — |
| Cholangiocytes | 39 | 0.1656050955414% | — | — | — |
| Stellate cells | 928 | 3.9405520169851% | — | — | — |
| Other stromal cells | 60 | 0.25477707006369% | — | — | — |
| Satellite cells | 86 | 0.3651804670913% | — | — | — |
| Smooth muscle cells | 65 | 0.276008492569% | — | — | — |
| Type II myonuclei | 41 | 0.17409766454352% | — | — | — |
| Endothelial cells | 1,237 | 5.2526539278132% | — | — | — |
| Colonic stem cells | 158 | 0.67091295116773% | — | — | — |
22 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 5754 | 24.4331 | Immune cells | #E91E63 |
| celltype | Cycling epithelial cells | 4791 | 20.3439 | Epithelial cells | #87CEFA |
| celltype | Enterocytes | 2057 | 8.7346 | Epithelial cells | #7E57C2 |
| celltype | Kupffer cells | 1814 | 7.7028 | Immune cells | #E91E63 |
| celltype | Monocytes | 1341 | 5.6943 | Immune cells | #2E7D32 |
| celltype | Endothelial cells | 1237 | 5.2527 | Endothelial cells | #D4E157 |
| celltype | Macrophages | 1167 | 4.9554 | Immune cells | #42A5F5 |
| celltype | Plasma B cells | 1139 | 4.8365 | Immune cells | #D4E157 |
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