ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP301_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
16,237
Cells represented in this release
🧬
Total Genes
14,862
Genes represented in the source matrix
🔷
Cell Types
13
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 3,026 | 18.636447619634% | — | — | — |
| T cells | 2,685 | 16.536305967851% | — | — | — |
| Monocytes | 755 | 4.64987374515% | — | — | — |
| Proximal tubule cells | 3,285 | 20.231569871282% | — | — | — |
| Urothelial cells | 411 | 2.5312557738498% | — | — | — |
| Connecting tubule cells | 47 | 0.28946233910205% | — | — | — |
| Fibroblasts | 567 | 3.4920243887418% | — | — | — |
| Mesothelial cells | 39 | 0.24019215372298% | — | — | — |
| Smooth muscle cells | 468 | 2.8823058446757% | — | — | — |
| Endothelial cells | 2,904 | 17.885077292603% | — | — | — |
| Ascending loop of Henle cells | 1,007 | 6.2018845845907% | — | — | — |
| Intercalated cells | 657 | 4.0463139742563% | — | — | — |
| Principal cells | 386 | 2.3772864445402% | — | — | — |
13 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Proximal tubule cells | 3285 | 20.2316 | Epithelial cells | #00ACC1 |
| celltype | Macrophages | 3026 | 18.6364 | Immune cells | #42A5F5 |
| celltype | Endothelial cells | 2904 | 17.8851 | Endothelial cells | #D4E157 |
| celltype | T cells | 2685 | 16.5363 | Immune cells | #E91E63 |
| celltype | Ascending loop of Henle cells | 1007 | 6.2019 | Other | #AB47BC |
| celltype | Monocytes | 755 | 4.6499 | Immune cells | #2E7D32 |
| celltype | Intercalated cells | 657 | 4.0463 | Other | #F44336 |
| celltype | Fibroblasts | 567 | 3.492 | Stromal cells | #FF8A65 |
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