ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP451
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP451/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
214,818
Cells represented in this release
🧬
Total Genes
16,999
Genes represented in the source matrix
🔷
Cell Types
61
Annotated cell-type groups
🫀
Tissues
20
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Microglia | 10,151 | 4.725395451033% | — | — | — |
| Granule cells | 9,747 | 4.5373292740832% | — | — | — |
| Inhibitory neurons | 3,165 | 1.4733402228864% | — | — | — |
| Adrenergic neurons | 1,347 | 0.6270424266123% | — | — | — |
| Astrocytes | 1,151 | 0.53580240017131% | — | — | — |
| Oligodendrocytes | 1,148 | 0.53440586915435% | — | — | — |
| Purkinje cells | 563 | 0.26208232084835% | — | — | — |
| Oligodendrocyte progenitor cells | 216 | 0.10055023322068% | — | — | — |
| Enteric glial cells | 106 | 0.049344095932371% | — | — | — |
| Schwann cells | 57 | 0.026534089322124% | — | — | — |
| Melanocytes | 34 | 0.015827351525477% | — | — | — |
| T cells | 17,451 | 8.1236209256208% | — | — | — |
| Monocytes | 5,608 | 2.6105819810258% | — | — | — |
| Plasma B cells | 5,381 | 2.5049111340763% | — | — | — |
| Macrophages | 4,887 | 2.2749490266179% | — | — | — |
| B cells | 2,757 | 1.2834120045806% | — | — | — |
| Pancreas islet cells | 1,922 | 0.89471087152846% | — | — | — |
| Natural killer cells | 938 | 0.43664869796758% | — | — | — |
| Mast cells | 713 | 0.33190887169604% | — | — | — |
| Dendritic cells | 600 | 0.27930620339078% | — | — | — |
| Cycling T cells | 455 | 0.21180720423801% | — | — | — |
| Natural killer T cells | 421 | 0.19597985271253% | — | — | — |
| Neutrophils | 168 | 0.078205736949418% | — | — | — |
| Club cells | 96 | 0.044688992542524% | — | — | — |
| Kupffer cells | 57 | 0.026534089322124% | — | — | — |
| Acinar cells | 33,106 | 15.411185282425% | — | — | — |
| Proximal tubule cells | 22,070 | 10.273813181391% | — | — | — |
| Epididymal epithelial cells | 6,014 | 2.7995791786536% | — | — | — |
| Keratinocytes | 2,692 | 1.2531538325466% | — | — | — |
| Pancreas ductal cells | 2,240 | 1.0427431593256% | — | — | — |
| Glandular cells | 1,862 | 0.86678025118938% | — | — | — |
| Basal cells | 1,515 | 0.70524816356171% | — | — | — |
| Distal convoluted tubule cells | 1,386 | 0.6451973298327% | — | — | — |
| Lactotropes | 994 | 0.46271727695072% | — | — | — |
| Cholangiocytes | 936 | 0.43571767728961% | — | — | — |
| Peritubular myoid cells | 784 | 0.36496010576395% | — | — | — |
| Somatotropes | 729 | 0.33935703711979% | — | — | — |
| Pinealocytes | 592 | 0.2755821206789% | — | — | — |
| Podocytes | 545 | 0.25370313474662% | — | — | — |
| Enterocytes | 359 | 0.16711821169548% | — | — | — |
| Alveolar type 2 cells | 222 | 0.10334329525459% | — | — | — |
| Cycling epithelial cells | 179 | 0.083326350678249% | — | — | — |
| Cycling gastric epithelial cell | 53 | 0.024672047966185% | — | — | — |
| Ciliated cells | 44 | 0.020482454915324% | — | — | — |
| Alveolar type 1 cells | 12 | 0.0055861240678155% | — | — | — |
| Fibroblasts | 17,726 | 8.2516362688415% | — | — | — |
| Other stromal cells | 3,649 | 1.6986472269549% | — | — | — |
| Stellate cells | 2,234 | 1.0399500972917% | — | — | — |
| Folliculostellate cells | 1,063 | 0.49483749034066% | — | — | — |
| Pericytes | 613 | 0.28535783779758% | — | — | — |
| Leydig cells | 507 | 0.23601374186521% | — | — | — |
| Smooth muscle cells | 2,832 | 1.3183252800045% | — | — | — |
| Skeletal myonuclei | 414 | 0.19272128033964% | — | — | — |
| Satellite cells | 344 | 0.16013555661071% | — | — | — |
| Spermatozoa | 2,932 | 1.3648763139029% | — | — | — |
| Spermatogonia | 1,321 | 0.61493915779869% | — | — | — |
| Endothelial cells | 33,459 | 15.575510432087% | — | — | — |
| Ascending loop of Henle cells | 954 | 0.44409686339134% | — | — | — |
| Principal cells | 769 | 0.35797745067918% | — | — | — |
| Intercalated cells | 497 | 0.23135863847536% | — | — | — |
| Sebocytes | 31 | 0.014430820508523% | — | — | — |
61 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Endothelial cells | 33459 | 15.5755 | Endothelial cells | #29B6F6 |
| celltype | Acinar cells | 33106 | 15.4112 | Epithelial cells | #4CAF50 |
| celltype | Proximal tubule cells | 22070 | 10.2738 | Epithelial cells | #29B6F6 |
| celltype | Fibroblasts | 17726 | 8.2516 | Stromal cells | #EF5350 |
| celltype | T cells | 17451 | 8.1236 | Immune cells | #BA68C8 |
| celltype | Microglia | 10151 | 4.7254 | Neural cells | #E91E63 |
| celltype | Granule cells | 9747 | 4.5373 | Neural cells | #9370DB |
| celltype | Epididymal epithelial cells | 6014 | 2.7996 | Epithelial cells | #7E57C2 |
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