ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP451_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
61,526
Cells represented in this release
🧬
Total Genes
16,999
Genes represented in the source matrix
🔷
Cell Types
20
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 106 | 0.17228488768976% | — | — | — |
| T cells | 8,165 | 13.270812339499% | — | — | — |
| Pancreas islet cells | 1,922 | 3.1238825862237% | — | — | — |
| Monocytes | 1,219 | 1.9812762084322% | — | — | — |
| Plasma B cells | 894 | 1.4530442414589% | — | — | — |
| Mast cells | 603 | 0.98007346487664% | — | — | — |
| Macrophages | 393 | 0.63875434775542% | — | — | — |
| Dendritic cells | 268 | 0.43558820661184% | — | — | — |
| Cycling T cells | 169 | 0.27468062282612% | — | — | — |
| Kupffer cells | 57 | 0.092643760361473% | — | — | — |
| Acinar cells | 33,106 | 53.808146149595% | — | — | — |
| Pancreas ductal cells | 2,240 | 3.640737249293% | — | — | — |
| Cholangiocytes | 936 | 1.5213080648831% | — | — | — |
| Enterocytes | 359 | 0.58349315736437% | — | — | — |
| Cycling gastric epithelial cell | 53 | 0.086142443844879% | — | — | — |
| Fibroblasts | 4,201 | 6.8280076715535% | — | — | — |
| Stellate cells | 2,234 | 3.6309852745181% | — | — | — |
| Pericytes | 77 | 0.12515034294445% | — | — | — |
| Smooth muscle cells | 1,134 | 1.8431232324546% | — | — | — |
| Endothelial cells | 3,390 | 5.5098657478139% | — | — | — |
20 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Acinar cells | 33106 | 53.8081 | Epithelial cells | #4CAF50 |
| celltype | T cells | 8165 | 13.2708 | Immune cells | #BA68C8 |
| celltype | Fibroblasts | 4201 | 6.828 | Stromal cells | #EF5350 |
| celltype | Endothelial cells | 3390 | 5.5099 | Endothelial cells | #29B6F6 |
| celltype | Pancreas ductal cells | 2240 | 3.6407 | Epithelial cells | #66BB6A |
| celltype | Stellate cells | 2234 | 3.631 | Stromal cells | #9CCC65 |
| celltype | Pancreas islet cells | 1922 | 3.1239 | Immune cells | #2E7D32 |
| celltype | Monocytes | 1219 | 1.9813 | Immune cells | #42A5F5 |
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