ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP451_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
32,874
Cells represented in this release
🧬
Total Genes
16,999
Genes represented in the source matrix
🔷
Cell Types
10
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 2,558 | 7.7812252844193% | — | — | — |
| T cells | 1,319 | 4.0122893472045% | — | — | — |
| Proximal tubule cells | 22,070 | 67.135121980897% | — | — | — |
| Distal convoluted tubule cells | 1,386 | 4.2160978280708% | — | — | — |
| Podocytes | 545 | 1.6578451055545% | — | — | — |
| Fibroblasts | 778 | 2.3666119121494% | — | — | — |
| Endothelial cells | 1,998 | 6.0777514144917% | — | — | — |
| Ascending loop of Henle cells | 954 | 2.9019894141267% | — | — | — |
| Principal cells | 769 | 2.3392346535256% | — | — | — |
| Intercalated cells | 497 | 1.5118330595607% | — | — | — |
10 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Proximal tubule cells | 22070 | 67.1351 | Epithelial cells | #29B6F6 |
| celltype | Macrophages | 2558 | 7.7812 | Immune cells | #26C6DA |
| celltype | Endothelial cells | 1998 | 6.0778 | Endothelial cells | #29B6F6 |
| celltype | Distal convoluted tubule cells | 1386 | 4.2161 | Epithelial cells | #EC407A |
| celltype | T cells | 1319 | 4.0123 | Immune cells | #BA68C8 |
| celltype | Ascending loop of Henle cells | 954 | 2.902 | Other | #FFA726 |
| celltype | Fibroblasts | 778 | 2.3666 | Stromal cells | #EF5350 |
| celltype | Principal cells | 769 | 2.3392 | Other | #EC407A |
First 8 rows