CaCx-120-01-1A
De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.
Donor-Level Analysis Results
Matrix-backed CancerSCEM donor analysis for CaCx-120-01-1A, generated 2026-07-09 12:54:49 +0800.
2,000Cells analyzed
10Clusters
16,664Expressed genes
1042Mean genes
Gene Program Summary
| Program | Clusters | Mean Score | Max Score | Genes Used |
|---|---|---|---|---|
| Myeloid_APC | 10 | 0.5105 | 1.7943 | 9 |
| T_NK_cytotoxic | 10 | 0.3853 | 1.435 | 9 |
| B_plasma | 10 | 0.2805 | 0.6031 | 6 |
| Checkpoint_exhaustion | 10 | 0.1901 | 0.5106 | 8 |
| Epithelial_tumor | 10 | 0.0731 | 0.6036 | 6 |
| Proliferation | 10 | 0.0639 | 0.1357 | 3 |
| Fibroblast_stroma | 10 | 0.0212 | 0.1001 | 7 |
| Endothelial | 10 | 0.0208 | 0.0975 | 4 |
Cluster QC
| Cluster | Cells | Mean UMI | Median Genes | Mean Mito % |
|---|---|---|---|---|
| cluster_10 | 342 | 451 | ||
| cluster_4 | 332 | 509 | ||
| cluster_3 | 237 | 2115 | ||
| cluster_1 | 218 | 615 | ||
| cluster_5 | 212 | 601 | ||
| cluster_7 | 187 | 1015 | ||
| cluster_2 | 182 | 1556.5 | ||
| cluster_6 | 145 | 2012 | ||
| cluster_9 | 83 | 928 | ||
| cluster_8 | 62 | 919 |
Top Cluster Marker Genes
| Cluster | Rank | Gene | Score | Mean Expr | Detect Fraction |
|---|---|---|---|---|---|
| cluster_8 | 1 | S100A8 | 3.4223 | 4.0231 | 1 |
| cluster_2 | 1 | LYZ | 2.9011 | 3.1536 | 0.9945 |
| cluster_6 | 1 | RPS27 | 2.4102 | 3.9335 | 0.9931 |
| cluster_3 | 1 | RPS27 | 2.1048 | 3.5535 | 0.9916 |
| cluster_9 | 1 | AL136456.1 | 1.6641 | 1.7431 | 0.8434 |
| cluster_1 | 1 | SOD2 | 1.5188 | 2.4043 | 0.9679 |
| cluster_10 | 1 | NAMPT | 1.3729 | 2.6967 | 0.9942 |
| cluster_7 | 1 | IGKC | 0.6788 | 0.8852 | 0.3369 |
| cluster_5 | 1 | AOAH | 0.2868 | 0.8823 | 0.7075 |
| cluster_4 | 1 | COL1A2 | 0.173 | 0.1802 | 0.0633 |
| cluster_8 | 2 | S100A9 | 3.3781 | 4.0062 | 1 |
| cluster_2 | 2 | CTSB | 2.778 | 3.0278 | 1 |
| cluster_6 | 2 | RPS12 | 2.1814 | 3.366 | 0.9862 |
| cluster_3 | 2 | RPL41 | 1.938 | 3.4642 | 1 |
| cluster_1 | 2 | NAMPT | 1.3551 | 2.766 | 0.9771 |
| cluster_9 | 2 | LTB | 1.0351 | 1.3007 | 0.7349 |
| cluster_10 | 2 | DOCK4 | 0.9161 | 1.5522 | 0.8567 |
| cluster_7 | 2 | RABGAP1L | 0.5971 | 1.3117 | 0.8663 |
| cluster_4 | 2 | COL3A1 | 0.1681 | 0.1728 | 0.0753 |
| cluster_5 | 2 | ANK3 | 0.1267 | 0.3974 | 0.4151 |
| cluster_2 | 3 | FN1 | 2.568 | 2.6995 | 0.9835 |
| cluster_8 | 3 | CALML5 | 2.1635 | 2.2249 | 0.9355 |
| cluster_6 | 3 | RPL41 | 2.1574 | 3.7568 | 0.9931 |
| cluster_3 | 3 | RPLP1 | 1.8689 | 3.2777 | 1 |
| cluster_1 | 3 | CXCL8 | 1.2595 | 1.9921 | 0.8486 |
| cluster_9 | 3 | VAV3 | 0.975 | 1.271 | 0.7952 |
| cluster_10 | 3 | LUCAT1 | 0.8771 | 1.1845 | 0.7895 |
| cluster_7 | 3 | RPLP1 | 0.566 | 2.1433 | 0.9572 |
| cluster_4 | 3 | LUM | 0.1584 | 0.1634 | 0.0633 |
| cluster_5 | 3 | RABGAP1L | 0.1154 | 0.8736 | 0.7689 |
| cluster_2 | 4 | HLA-DRA | 2.5439 | 3.2861 | 1 |
| cluster_6 | 4 | RPS29 | 2.1407 | 3.3564 | 0.9724 |
| cluster_8 | 4 | S100A6 | 2.0455 | 2.8669 | 0.9839 |
| cluster_3 | 4 | RPS12 | 1.8451 | 2.9692 | 0.9916 |
| cluster_1 | 4 | C15orf48 | 1.1788 | 1.7139 | 0.8303 |
| cluster_9 | 4 | PHACTR2 | 0.9309 | 1.2476 | 0.7952 |
| cluster_10 | 4 | CXCL8 | 0.8574 | 1.5807 | 0.8421 |
| cluster_7 | 4 | JCHAIN | 0.532 | 0.5553 | 0.2674 |
| cluster_4 | 4 | IGKC | 0.116 | 0.3667 | 0.2199 |
| cluster_5 | 4 | PTPN22 | 0.1006 | 0.6097 | 0.5566 |
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
CaCx-120-01-1A
Sample ID
CaCx-120-01-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Cervical Cancer
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Cervical Cancer; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
10,404
Analysis Status
Matrix available; UMAP generated by fallback sampled pipeline
UMAP Status
Ready
Metadata / Source Notes
Project ID: CaCx-120; Cancer type: Cervical Cancer; Source: NCBI (GEO); Accession: GSE208653; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: CaCx-120-01-1A.counts.matrix.tsv.gz (14.05 MB); Matrix integrity: gzip file ended before end-of-stream marker during UMAP generation; redownload required before UMAP can be generated.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Cervical Cancer
cancer type short
CaCx
library count
1
library sample ids
CaCx-120-01-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE208653; downloaded 2026-07-06
data accession
GSE208653
project id
CaCx-120
sample type
Tumour
country
CHN
data source
NCBI (GEO)
accession no
GSE208653
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix incomplete; redownload required
matrix file name
CaCx-120-01-1A.counts.matrix.tsv.gz
matrix file size bytes
14728961
matrix file size mb
14.05
umap coordinates url
umap summary url
umap pipeline
Fallback Python normalize_total/log1p/HVG/SVD/UMAP; sampled 3000/10404 cells; generated 2026-07-09
matrix integrity status
Gzip EOF/truncated during UMAP generation