Home / Human Immune Atlas / Dataset Donors / LUSC-092-04-1A

LUSC-092-04-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

Back to Dataset Donors Human Immune Atlas

Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for LUSC-092-04-1A, generated 2026-07-09 12:54:49 +0800.

2,000Cells analyzed
22Clusters
25,931Expressed genes
6008Mean UMI
2247Mean genes
3.06Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
T_NK_cytotoxic 22 0.333 1.6464 10
B_plasma 22 0.295 2.0643 8
Myeloid_APC 22 0.2473 1.3342 9
Epithelial_tumor 22 0.2178 1.2064 8
Checkpoint_exhaustion 22 0.2034 0.8333 8
Proliferation 22 0.0681 0.289 7
Endothelial 22 0.0641 0.6844 7
Fibroblast_stroma 22 0.0493 0.7735 8
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 409 1039.5526 626 3.0777
cluster_2 351 7132.151 2979 3.406
cluster_3 246 8395.5163 3127 2.6263
cluster_4 196 9264.8776 3438.5 2.7376
cluster_5 146 4968.0205 1380.5 2.0927
cluster_6 128 8908.9844 3439 2.4099
cluster_7 114 7899.8684 2919.5 3.7109
cluster_8 89 7850.2697 3118 3.6389
cluster_9 86 1001.8605 610 3.3311
cluster_10 40 3178.675 1000 4.4354
cluster_11 33 16486 586 1.7832
cluster_12 29 5014.931 2343 3.0801
cluster_13 25 8618.72 2558 3.4857
cluster_14 24 8894.125 3134 3.6152
cluster_15 20 10868.2 3512.5 4.2791
cluster_16 15 1220.8 248 4.0142
cluster_17 11 5409 2742 3.2542
cluster_18 11 1194.7273 713 3.3154
cluster_19 10 2011.9 738 4.9695
cluster_20 8 6114.625 2039.5 5.2618
cluster_21 5 4228 1319 2.2824
cluster_22 4 2683.75 1449.5 3.839
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_16 1 HBB 5.8217 5.8508 1
cluster_11 1 IGKC 5.3791 5.6909 0.9091
cluster_15 1 TPSB2 4.3442 4.3505 1
cluster_21 1 TFF3 3.9766 4.0602 1
cluster_14 1 BANK1 3.091 3.106 1
cluster_8 1 GNLY 2.9424 3.2256 1
cluster_22 1 EREG 2.6442 2.6566 1
cluster_4 1 CCL5 2.6182 3.496 0.9898
cluster_10 1 HLA-DRA 2.403 2.7546 1
cluster_19 1 CALD1 2.1851 2.2126 1
cluster_5 1 AKR1C1 2.177 2.3368 0.9521
cluster_13 1 S100A2 2.1306 2.324 0.88
cluster_3 1 AL136456.1 2.0963 2.2839 0.8008
cluster_6 1 PDE7B 2.0484 2.164 0.8672
cluster_1 1 S100A8 2.007 2.2281 0.9511
cluster_17 1 PPBP 1.9441 1.9543 1
cluster_20 1 VWF 1.8117 1.8236 0.625
cluster_7 1 IL7R 1.6637 2.1479 0.8509
cluster_2 1 CCL5 1.5962 2.4504 0.9202
cluster_12 1 S100A8 1.5628 2.1717 0.9655
cluster_18 1 TUBB4B 1.5421 1.7918 1
cluster_9 1 DOCK4 1.2911 1.4494 0.9186
cluster_16 2 HBA2 4.5812 4.6016 1
cluster_11 2 IGHG3 4.2698 4.347 0.8788
cluster_15 2 CPA3 3.8211 3.8271 1
cluster_21 2 BPIFB1 3.679 3.7722 1
cluster_14 2 RALGPS2 2.6963 2.785 1
cluster_10 2 FTL 2.3841 4.1032 1
cluster_8 2 NKG7 2.3027 2.8019 1
cluster_4 2 GZMA 2.155 2.6225 0.9541
cluster_22 2 GAB2 2.0512 2.372 1
cluster_5 2 S100A11 2.0492 2.9651 0.9932
cluster_13 2 KRT19 1.9977 2.3498 1
cluster_1 2 S100A9 1.8575 2.209 0.9707
cluster_6 2 CXCL13 1.8088 1.915 0.7656
cluster_20 2 MCTP1 1.7553 1.8665 0.5
cluster_3 2 IKZF2 1.7499 1.9206 0.8821
cluster_12 2 S100A9 1.4763 2.1862 0.931
cluster_2 2 MALAT1 1.3829 5.5069 0.9972
cluster_7 2 ANK3 1.3671 1.9932 0.8772

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
LUSC-092-04-1A
Sample ID
LUSC-092-04-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Lung Squamous Cell Carcinoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Lung Squamous Cell Carcinoma; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
6,051
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: LUSC-092; Cancer type: Lung Squamous Cell Carcinoma; Source: NCBI (SRA); Accession: PRJNA976462; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: LUSC-092-04-1A.counts.matrix.tsv.gz (16.53 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=6051; raw genes=30127; Leiden clusters=22; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Lung Squamous Cell Carcinoma
cancer type short
LUSC
library count
1
library sample ids
LUSC-092-04-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (SRA); accession=PRJNA976462; downloaded 2026-07-06
data accession
PRJNA976462
project id
LUSC-092
sample type
Tumour
country
CHN
data source
NCBI (SRA)
accession no
PRJNA976462
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
LUSC-092-04-1A.counts.matrix.tsv.gz
matrix file size bytes
17333460
matrix file size mb
16.53
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/LUSC-092-04-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/LUSC-092-04-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/LUSC-092-04-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=6051; raw_genes=30127; leiden_clusters=22; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated