NB-033-07-1A
De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.
Donor-Level Analysis Results
Matrix-backed CancerSCEM donor analysis for NB-033-07-1A, generated 2026-07-09 12:54:49 +0800.
2,000Cells analyzed
10Clusters
6,030Expressed genes
314.1Mean genes
Gene Program Summary
| Program | Clusters | Mean Score | Max Score | Genes Used |
|---|---|---|---|---|
| Proliferation | 10 | 0.492 | 1.1904 | 2 |
| Myeloid_APC | 10 | 0.1201 | 0.8959 | 5 |
| Fibroblast_stroma | 10 | 0.1002 | 0.866 | 2 |
| T_NK_cytotoxic | 10 | 0.0117 | 0.0914 | 2 |
| B_plasma | 10 | 0.011 | 0.0378 | 2 |
| Epithelial_tumor | 10 | 0.0026 | 0.011 | 3 |
| Endothelial | 10 | 0.0017 | 0.0165 | 1 |
| Checkpoint_exhaustion | 10 | 0.0004 | 0.0042 | 3 |
Cluster QC
| Cluster | Cells | Mean UMI | Median Genes | Mean Mito % |
|---|---|---|---|---|
| cluster_10 | 332 | 385 | ||
| cluster_6 | 321 | 364 | ||
| cluster_8 | 253 | 114 | ||
| cluster_9 | 226 | 363 | ||
| cluster_4 | 221 | 332 | ||
| cluster_1 | 207 | 324 | ||
| cluster_2 | 199 | 126 | ||
| cluster_3 | 141 | 517 | ||
| cluster_7 | 58 | 220.5 | ||
| cluster_5 | 42 | 348.5 |
Top Cluster Marker Genes
| Cluster | Rank | Gene | Score | Mean Expr | Detect Fraction |
|---|---|---|---|---|---|
| cluster_5 | 1 | S100A6 | 2.3907 | 2.5364 | 0.9524 |
| cluster_7 | 1 | C1QB | 1.9261 | 1.9553 | 0.9483 |
| cluster_3 | 1 | H2AFZ | 1.3059 | 2.0664 | 0.9858 |
| cluster_10 | 1 | SST | 0.7487 | 1.5707 | 0.8825 |
| cluster_2 | 1 | CD52 | 0.7214 | 0.7676 | 0.6583 |
| cluster_6 | 1 | GAS5 | 0.5504 | 1.8552 | 0.9751 |
| cluster_1 | 1 | SOX2-OT | 0.4886 | 1.4481 | 0.9275 |
| cluster_9 | 1 | CCNI | 0.4576 | 1.8851 | 0.9779 |
| cluster_4 | 1 | SOX2-OT | 0.3985 | 1.3646 | 0.8869 |
| cluster_8 | 1 | HMGB2 | 0.1072 | 0.2974 | 0.3004 |
| cluster_5 | 2 | S100A10 | 2.0528 | 2.1189 | 0.9762 |
| cluster_7 | 2 | C1QA | 1.7821 | 1.8119 | 0.9655 |
| cluster_3 | 2 | HMGN2 | 0.9852 | 1.4502 | 0.9433 |
| cluster_10 | 2 | IQCJ-SCHIP1 | 0.7252 | 1.5118 | 0.9066 |
| cluster_2 | 2 | S100A4 | 0.5393 | 0.5797 | 0.4774 |
| cluster_6 | 2 | CCNI | 0.5206 | 1.9162 | 0.9813 |
| cluster_9 | 2 | RPL37A | 0.455 | 2.7972 | 1 |
| cluster_4 | 2 | MARCH11 | 0.3362 | 1.2512 | 0.914 |
| cluster_1 | 2 | CACNA2D3 | 0.2784 | 0.4832 | 0.5169 |
| cluster_8 | 2 | CKS1B | 0.0607 | 0.2237 | 0.2609 |
| cluster_5 | 3 | COL3A1 | 1.4661 | 1.4719 | 0.7619 |
| cluster_7 | 3 | FCER1G | 1.1049 | 1.1615 | 0.8448 |
| cluster_3 | 3 | HMGB2 | 0.8631 | 1.0061 | 0.7943 |
| cluster_10 | 3 | LSAMP | 0.6366 | 1.4198 | 0.9277 |
| cluster_2 | 3 | S100A6 | 0.5239 | 0.6676 | 0.5176 |
| cluster_6 | 3 | RPSA | 0.4559 | 2.4281 | 1 |
| cluster_9 | 3 | RPL5 | 0.4457 | 2.2128 | 0.9867 |
| cluster_4 | 3 | IQCJ-SCHIP1 | 0.313 | 1.1854 | 0.7557 |
| cluster_1 | 3 | RGS7 | 0.2759 | 0.5712 | 0.628 |
| cluster_8 | 3 | MAD2L1 | 0.0522 | 0.1157 | 0.1462 |
| cluster_5 | 4 | IGFBP7 | 1.3958 | 1.4111 | 0.8571 |
| cluster_7 | 4 | C1QC | 1.1048 | 1.1148 | 0.8103 |
| cluster_3 | 4 | NUCKS1 | 0.7842 | 1.2013 | 0.9007 |
| cluster_10 | 4 | NLGN1 | 0.6075 | 1.0256 | 0.756 |
| cluster_2 | 4 | SH3BGRL3 | 0.4468 | 0.629 | 0.5628 |
| cluster_9 | 4 | ZNF804A | 0.4455 | 0.6531 | 0.6018 |
| cluster_6 | 4 | RPL29 | 0.4231 | 2.7401 | 0.9969 |
| cluster_4 | 4 | C4orf48 | 0.2758 | 0.8223 | 0.7421 |
| cluster_1 | 4 | SLC8A1 | 0.2603 | 0.586 | 0.6135 |
| cluster_8 | 4 | MRPS30 | 0.0316 |
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
NB-033-07-1A
Sample ID
NB-033-07-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Neuroblastoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Neuroblastoma; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
16,510
Analysis Status
Matrix available; UMAP generated by fallback sampled pipeline
UMAP Status
Ready
Metadata / Source Notes
Project ID: NB-033; Cancer type: Neuroblastoma; Source: NCBI (GEO); Accession: GSE137804; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: NB-033-07-1A.counts.matrix.tsv.gz (6.45 MB); Matrix integrity: gzip file ended before end-of-stream marker during UMAP generation; redownload required before UMAP can be generated.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Neuroblastoma
cancer type short
NB
library count
1
library sample ids
NB-033-07-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE137804; downloaded 2026-07-06
data accession
GSE137804
project id
NB-033
sample type
Tumour
country
CHN
data source
NCBI (GEO)
accession no
GSE137804
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix incomplete; redownload required
matrix file name
NB-033-07-1A.counts.matrix.tsv.gz
matrix file size bytes
6766337
matrix file size mb
6.45
umap coordinates url
umap summary url
umap pipeline
Fallback Python normalize_total/log1p/HVG/SVD/UMAP; sampled 3000/16510 cells; generated 2026-07-09
matrix integrity status
Gzip EOF/truncated during UMAP generation