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NSCLC-007-03-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

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Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for NSCLC-007-03-1A, generated 2026-07-09 12:54:49 +0800.

1,999Cells analyzed
21Clusters
21,279Expressed genes
8858Mean UMI
2262Mean genes
3.982Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
Myeloid_APC 21 0.6792 1.9291 9
Epithelial_tumor 21 0.4954 1.8953 7
B_plasma 21 0.2831 0.6757 8
Fibroblast_stroma 21 0.2641 2.4372 8
Proliferation 21 0.2635 1.0776 7
T_NK_cytotoxic 21 0.1873 1.5813 10
Endothelial 21 0.084 0.7065 7
Checkpoint_exhaustion 21 0.0742 0.2767 8
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 249 11112.49 2981 5.4576
cluster_2 242 6029.0372 1951.5 3.3203
cluster_3 224 2677.192 691 1.8996
cluster_4 191 19112.2251 4263 6.2411
cluster_5 190 5982.0895 1487.5 2.6499
cluster_6 170 16068.3176 3577 5.0792
cluster_7 119 2621.6639 940 3.8813
cluster_8 105 6666.3429 1615 3.5046
cluster_9 103 16119.3495 4090 4.9131
cluster_10 81 6077.0123 1779 4.4429
cluster_11 62 6165.4032 2154.5 3.0215
cluster_12 52 9783.7115 2840 2.9248
cluster_13 36 8485.5278 2135 4.3929
cluster_14 34 8302.0588 2157.5 3.1632
cluster_15 26 3912.8077 1172.5 2.8908
cluster_16 24 3438.6667 769.5 4.6575
cluster_17 24 10201.8333 2392 2.0549
cluster_18 24 1967.4583 739.5 4.3549
cluster_19 22 7775.3636 1879 4.9138
cluster_20 12 3072.75 1712.5 3.6684
cluster_21 9 3867.6667 654 2.0624
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_13 1 CCL3 3.9243 4.7365 1
cluster_11 1 IGFBP7 3.7667 4.0903 1
cluster_14 1 GNLY 3.7645 3.8395 0.9412
cluster_20 1 PLP1 3.7499 3.8025 1
cluster_19 1 IGFBP7 3.4623 3.8646 1
cluster_17 1 HLA-DPB1 3.309 4.2343 1
cluster_8 1 APOE 2.8386 3.9875 0.981
cluster_5 1 SPP1 2.4726 3.8215 0.9421
cluster_6 1 LCN2 2.4289 3.648 1
cluster_12 1 C1QB 2.3213 3.5086 0.9808
cluster_4 1 MT1E 2.2529 3.7448 0.9895
cluster_10 1 C1QA 2.1492 3.2478 0.9877
cluster_2 1 C1QB 1.9594 2.9699 0.9917
cluster_15 1 IL32 1.9008 2.5969 1
cluster_1 1 SAA1 1.8557 3.38 0.992
cluster_18 1 NKG7 1.8112 1.9311 0.9583
cluster_9 1 MT1E 1.754 3.3708 1
cluster_7 1 CXCR4 1.6961 2.0098 0.958
cluster_21 1 IGFBP7 1.5528 1.9862 0.8889
cluster_16 1 MALAT1 1.102 5.0644 1
cluster_13 2 CCL4L2 3.9151 4.4371 1
cluster_19 2 MGP 3.3882 3.6726 1
cluster_17 2 HLA-DRA 3.2506 4.924 1
cluster_14 2 GZMA 3.2127 3.3092 0.9412
cluster_20 2 PTGDS 2.8125 2.94 1
cluster_11 2 TAGLN 2.7419 2.8377 0.9839
cluster_8 2 APOC1 2.3283 3.4819 0.9333
cluster_6 2 WFDC2 2.2512 3.7143 1
cluster_4 2 MDK 2.2317 3.6941 0.9948
cluster_10 2 FTL 2.1219 5.9928 1
cluster_12 2 C1QC 2.0227 2.9151 0.9808
cluster_5 2 FTL 1.9007 5.677 1
cluster_2 2 C1QC 1.7861 2.5149 0.9545
cluster_9 2 SAA1 1.7445 3.4101 1
cluster_18 2 CCL5 1.7435 1.9214 0.9167
cluster_1 2 MDK 1.7231 3.1841 0.992
cluster_15 2 TRAC 1.5094 1.5948 0.8846
cluster_7 2 BTG1 1.2139 2.217 1
cluster_21 2 RAMP2 1.1331 1.1418 0.7778
cluster_16 2 TPSB2 0.6647 0.6676 0.1667

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
NSCLC-007-03-1A
Sample ID
NSCLC-007-03-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Non-small Cell Lung Cancer
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Non-small Cell Lung Cancer; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
5,169
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: NSCLC-007; Cancer type: Non-small Cell Lung Cancer; Source: NCBI (GEO); Accession: GSE143423; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: NSCLC-007-03-1A.counts.matrix.tsv.gz (13.21 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=5169; raw genes=22875; Leiden clusters=21; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Non-small Cell Lung Cancer
cancer type short
NSCLC
library count
1
library sample ids
NSCLC-007-03-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE143423; downloaded 2026-07-06
data accession
GSE143423
project id
NSCLC-007
sample type
Tumour
country
CHN
data source
NCBI (GEO)
accession no
GSE143423
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
NSCLC-007-03-1A.counts.matrix.tsv.gz
matrix file size bytes
13846491
matrix file size mb
13.21
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/NSCLC-007-03-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/NSCLC-007-03-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/NSCLC-007-03-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=5169; raw_genes=22875; leiden_clusters=21; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated