Home / Human Immune Atlas / Dataset Donors / PAAD-062-08-1A

PAAD-062-08-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

Back to Dataset Donors Human Immune Atlas

Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for PAAD-062-08-1A, generated 2026-07-09 12:54:49 +0800.

2,000Cells analyzed
21Clusters
23,209Expressed genes
5406Mean UMI
1824Mean genes
5.124Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
B_plasma 21 0.4139 2.2217 8
Myeloid_APC 21 0.3429 2.5633 9
T_NK_cytotoxic 21 0.3287 1.125 10
Fibroblast_stroma 21 0.319 2.8096 8
Proliferation 21 0.113 1.363 7
Epithelial_tumor 21 0.1014 1.054 8
Endothelial 21 0.0989 0.9983 7
Checkpoint_exhaustion 21 0.0911 0.317 8
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 392 3715.9923 1543 5.4253
cluster_2 358 2871.8436 1426 5.6875
cluster_3 215 12010.307 3365 4.7806
cluster_4 176 3243.7386 1507.5 4.3621
cluster_5 160 3712.8125 1525 5.9753
cluster_6 98 10543.6122 2921.5 3.9566
cluster_7 93 2949.7742 1501 5.4509
cluster_8 89 3279.6854 1539 5.3546
cluster_9 71 3214.169 1558 5.4103
cluster_10 59 3361.9322 1451 5.4239
cluster_11 52 5164.25 1509.5 3.8848
cluster_12 52 3519.9231 1519 4.2528
cluster_13 50 10966.96 3744.5 6.4762
cluster_14 45 22175.4 1918 1.7208
cluster_15 23 1216.0435 376 3.9473
cluster_16 20 13612.6 4240.5 4.8322
cluster_17 14 5696.9286 2505.5 5.4803
cluster_18 11 6907.3636 2327 5.4585
cluster_19 10 5656.8 2555 4.9423
cluster_20 9 3217.4444 1000 6.0014
cluster_21 3 4766.3333 2084 2.3474
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_16 1 MGP 4.4308 4.5466 1
cluster_14 1 IGKC 4.2277 4.7768 0.8222
cluster_3 1 FTL 3.9013 5.7009 1
cluster_20 1 TPSB2 3.8035 3.8049 1
cluster_13 1 COL1A1 3.7449 3.8632 0.94
cluster_18 1 IGFBP7 3.5901 3.7772 1
cluster_6 1 HLA-DRA 3.154 4.1502 1
cluster_17 1 IGFBP7 2.5794 2.7682 0.9286
cluster_19 1 STMN1 2.4223 2.5608 1
cluster_21 1 HSPA1A 2.3787 3.2162 1
cluster_10 1 IGHM 2.1995 2.2378 0.9831
cluster_7 1 NKG7 2.1428 2.6949 0.9785
cluster_15 1 G0S2 2.1197 2.4306 1
cluster_11 1 KRT18 1.912 2.0171 0.8654
cluster_9 1 NKG7 1.7862 2.3745 0.9577
cluster_5 1 HLA-DRA 1.7849 2.7928 0.9875
cluster_4 1 CCL5 1.5362 2.3168 0.9716
cluster_8 1 NKG7 1.2884 1.8829 0.9101
cluster_12 1 IL32 1.2295 2.2023 0.9615
cluster_1 1 IL7R 0.9975 1.3384 0.8291
cluster_2 1 CCL5 0.8835 1.6412 0.9218
cluster_16 2 DCN 4.2811 4.3839 1
cluster_14 2 IGLC2 4.1015 4.3402 0.7778
cluster_3 2 C1QB 3.5781 3.696 0.9395
cluster_18 2 PRKG1 3.391 3.4597 1
cluster_13 2 COL1A2 3.3539 3.4418 0.96
cluster_6 2 IL1B 3.0973 3.4149 0.8469
cluster_20 2 TPSAB1 2.7265 2.7276 1
cluster_17 2 SPARCL1 2.3955 2.4653 0.9286
cluster_19 2 TUBA1B 2.3378 3.0897 1
cluster_21 2 NR4A3 2.1614 2.8095 1
cluster_7 2 GNLY 1.9589 2.0566 0.871
cluster_11 2 KRT19 1.8063 1.8745 0.9423
cluster_15 2 CXCL8 1.7026 2.1206 0.9565
cluster_10 2 HLA-DRA 1.6634 2.7651 1
cluster_5 2 CD74 1.6351 3.018 0.9938
cluster_4 2 CCL4 1.4068 2.3056 0.9034
cluster_9 2 GNLY 1.3061 1.4485 0.7324
cluster_8 2 AOAH 1.0946 1.8621 0.8876
cluster_12 2 LTB 1.0027 1.6237 0.8654

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
PAAD-062-08-1A
Sample ID
PAAD-062-08-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Pancreatic Cancer
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Pancreatic Cancer; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
4,606
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: PAAD-062; Cancer type: Pancreatic Cancer; Source: NCBI (SRA); Accession: PRJNA839155; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: PAAD-062-08-1A.counts.matrix.tsv.gz (10.13 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=4606; raw genes=24984; Leiden clusters=21; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Pancreatic Cancer
cancer type short
PAAD
library count
1
library sample ids
PAAD-062-08-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (SRA); accession=PRJNA839155; downloaded 2026-07-06
data accession
PRJNA839155
project id
PAAD-062
sample type
Tumour
country
CHN
data source
NCBI (SRA)
accession no
PRJNA839155
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
PAAD-062-08-1A.counts.matrix.tsv.gz
matrix file size bytes
10620594
matrix file size mb
10.13
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/PAAD-062-08-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PAAD-062-08-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PAAD-062-08-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=4606; raw_genes=24984; leiden_clusters=21; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated