PDAC-106-01-1A
De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.
Donor-Level Analysis Results
Matrix-backed CancerSCEM donor analysis for PDAC-106-01-1A, generated 2026-07-09 12:54:49 +0800.
2,000Cells analyzed
10Clusters
15,487Expressed genes
1634Mean genes
Gene Program Summary
| Program | Clusters | Mean Score | Max Score | Genes Used |
|---|---|---|---|---|
| Epithelial_tumor | 10 | 0.7985 | 2.2668 | 6 |
| Myeloid_APC | 10 | 0.5255 | 2.0365 | 9 |
| Fibroblast_stroma | 10 | 0.2767 | 1.289 | 7 |
| B_plasma | 10 | 0.26 | 0.7923 | 5 |
| T_NK_cytotoxic | 10 | 0.1233 | 0.4166 | 7 |
| Proliferation | 10 | 0.0947 | 0.305 | 3 |
| Endothelial | 10 | 0.0627 | 0.1146 | 4 |
| Checkpoint_exhaustion | 10 | 0.0567 | 0.1181 | 8 |
Cluster QC
| Cluster | Cells | Mean UMI | Median Genes | Mean Mito % |
|---|---|---|---|---|
| cluster_8 | 289 | 916 | ||
| cluster_7 | 285 | 2015 | ||
| cluster_1 | 272 | 747.5 | ||
| cluster_10 | 269 | 2640 | ||
| cluster_5 | 244 | 2719.5 | ||
| cluster_6 | 216 | 657.5 | ||
| cluster_2 | 173 | 2221 | ||
| cluster_4 | 96 | 1638.5 | ||
| cluster_3 | 89 | 640 | ||
| cluster_9 | 67 | 1575 |
Top Cluster Marker Genes
| Cluster | Rank | Gene | Score | Mean Expr | Detect Fraction |
|---|---|---|---|---|---|
| cluster_9 | 1 | SPP1 | 4.0856 | 4.3423 | 0.9254 |
| cluster_4 | 1 | HLA-DRA | 3.4631 | 4.016 | 1 |
| cluster_5 | 1 | MUC1 | 2.6643 | 3.923 | 1 |
| cluster_3 | 1 | CPA3 | 2.3074 | 2.312 | 1 |
| cluster_10 | 1 | ATF3 | 1.8031 | 2.9908 | 0.9888 |
| cluster_2 | 1 | S100A6 | 1.7155 | 4.4496 | 1 |
| cluster_8 | 1 | IGFBP7 | 1.4933 | 1.7256 | 0.5156 |
| cluster_1 | 1 | COL1A2 | 1.3977 | 1.7266 | 0.4522 |
| cluster_6 | 1 | CD69 | 1.0414 | 1.4802 | 0.8426 |
| cluster_7 | 1 | AGR2 | 0.9212 | 2.3822 | 0.7754 |
| cluster_4 | 2 | CD74 | 3.1448 | 3.8549 | 1 |
| cluster_5 | 2 | AGR2 | 2.4013 | 3.7006 | 1 |
| cluster_9 | 2 | FCER1G | 2.0381 | 2.3272 | 0.8806 |
| cluster_10 | 2 | CLDN4 | 1.6037 | 2.7081 | 0.9591 |
| cluster_2 | 2 | CLDN18 | 1.4624 | 2.4464 | 0.9538 |
| cluster_8 | 2 | COL1A2 | 1.3793 | 1.699 | 0.4879 |
| cluster_1 | 2 | COL3A1 | 1.374 | 1.6923 | 0.4338 |
| cluster_3 | 2 | SRGN | 1.2964 | 2.0051 | 0.9888 |
| cluster_6 | 2 | PTPRC | 1.0046 | 1.3676 | 0.8981 |
| cluster_7 | 2 | GAPDH | 0.918 | 2.7576 | 0.9895 |
| cluster_4 | 3 | C1QB | 3.0564 | 3.1283 | 0.9896 |
| cluster_5 | 3 | S100A6 | 2.1971 | 4.8116 | 1 |
| cluster_9 | 3 | FTH1 | 1.9989 | 4.5321 | 0.9851 |
| cluster_10 | 3 | EGR1 | 1.5278 | 2.4672 | 0.974 |
| cluster_8 | 3 | COL3A1 | 1.3721 | 1.679 | 0.4879 |
| cluster_3 | 3 | CD69 | 1.2442 | 1.7401 | 0.9213 |
| cluster_2 | 3 | CLDN4 | 1.2367 | 2.4499 | 0.9711 |
| cluster_1 | 3 | CALD1 | 1.1427 | 1.418 | 0.4412 |
| cluster_7 | 3 | LYZ | 0.9096 | 2.5556 | 0.8632 |
| cluster_6 | 3 | CXCR4 | 0.8482 | 1.1247 | 0.8102 |
| cluster_4 | 4 | C1QA | 2.9994 | 3.074 | 1 |
| cluster_9 | 4 | VIM | 1.9791 | 2.6827 | 0.8358 |
| cluster_5 | 4 | CLDN18 | 1.9573 | 2.829 | 0.9959 |
| cluster_10 | 4 | GPRC5A | 1.4984 | 2.308 | 0.9442 |
| cluster_8 | 4 | LUM | 1.2563 | 1.4848 | 0.4637 |
| cluster_2 | 4 | S100A14 | 1.2205 | 1.9915 | 0.9364 |
| cluster_3 | 4 | FER | 1.0737 | 1.2005 | 0.7978 |
| cluster_1 | 4 | LUM | 1.0332 | 1.3027 | 0.4191 |
| cluster_7 | 4 | RPS3 | 0.9019 | 3.5451 | 0.9965 |
| cluster_6 | 4 | SRGN | 0.8295 | 1.5063 | 0.9306 |
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
PDAC-106-01-1A
Sample ID
PDAC-106-01-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Pancreatic Ductal Adenocarcinoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Pancreatic Ductal Adenocarcinoma; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
3,370
Analysis Status
Matrix available; UMAP generated by fallback sampled pipeline
UMAP Status
Ready
Metadata / Source Notes
Project ID: PDAC-106; Cancer type: Pancreatic Ductal Adenocarcinoma; Source: NGDC (GSA-human); Accession: PRJCA016878; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: PDAC-106-01-1A.counts.matrix.tsv.gz (6.30 MB); Matrix integrity: gzip file ended before end-of-stream marker during UMAP generation; redownload required before UMAP can be generated.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Pancreatic Ductal Adenocarcinoma
cancer type short
PDAC
library count
1
library sample ids
PDAC-106-01-1A
source reference
CancerSCEM 2.0 metadata table; data source=NGDC (GSA-human); accession=PRJCA016878; downloaded 2026-07-06
data accession
PRJCA016878
project id
PDAC-106
sample type
Tumour
country
CHN
data source
NGDC (GSA-human)
accession no
PRJCA016878
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix incomplete; redownload required
matrix file name
PDAC-106-01-1A.counts.matrix.tsv.gz
matrix file size bytes
6602498
matrix file size mb
6.30
umap coordinates url
umap summary url
umap pipeline
Fallback Python normalize_total/log1p/HVG/SVD/UMAP; sampled 3000/3370 cells; generated 2026-07-09
matrix integrity status
Gzip EOF/truncated during UMAP generation