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SACC-103-04-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

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Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for SACC-103-04-1A, generated 2026-07-09 12:54:49 +0800.

1,999Cells analyzed
18Clusters
27,650Expressed genes
8600Mean UMI
2496Mean genes
3.617Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
Epithelial_tumor 18 0.8467 2.5211 8
Fibroblast_stroma 18 0.4467 2.4351 8
Myeloid_APC 18 0.1202 1.077 9
Endothelial 18 0.0997 1.0172 7
Proliferation 18 0.0994 0.1956 7
B_plasma 18 0.0777 0.4338 8
Checkpoint_exhaustion 18 0.0337 0.1532 8
T_NK_cytotoxic 18 0.0318 0.3718 10
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 228 7674.3158 2550 3.9278
cluster_2 218 16480.0963 3707.5 4.7172
cluster_3 217 13501.8295 3332 4.8334
cluster_4 211 12118.91 3682 5.594
cluster_5 174 5800.6552 2097.5 2.4538
cluster_6 167 3414.8323 1352 3.4155
cluster_7 149 4424.1074 1832 3.2602
cluster_8 139 10935.482 2264 0.8375
cluster_9 122 1381.2869 704.5 1.871
cluster_10 87 5505.7471 2083 3.5257
cluster_11 54 7099.5741 2234.5 2.8591
cluster_12 52 9426.6154 3143 2.2451
cluster_13 52 4015.4615 1459.5 3.7558
cluster_14 42 12085.8333 3346 4.6568
cluster_15 36 4237.5833 854 1.7335
cluster_16 28 4088.0357 1391 3.7947
cluster_17 15 4498.6667 2209 6.0046
cluster_18 8 3799.375 1443.5 2.8784
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_12 1 COL1A1 3.6879 3.8908 1
cluster_5 1 APOD 3.5065 3.9007 0.9885
cluster_11 1 HLA-DRA 3.1177 3.2636 0.9259
cluster_18 1 TTN 2.9504 2.9911 1
cluster_2 1 KRT17 2.842 4.6673 1
cluster_7 1 DCN 2.831 3.4815 0.9732
cluster_13 1 IGFBP7 2.2141 3.1372 0.9808
cluster_14 1 KRT14 2.1885 4.0238 1
cluster_10 1 SPARCL1 2.0417 2.5814 0.954
cluster_6 1 CXCR4 2.0282 2.2389 0.9581
cluster_16 1 IGFBP5 1.9016 2.3694 0.9286
cluster_3 1 KRT19 1.8054 3.173 0.9816
cluster_4 1 DLGAP1 1.7416 2.6949 0.9716
cluster_15 1 HLA-DPA1 1.7236 1.897 0.9444
cluster_8 1 KRT17 1.4939 3.5252 0.9065
cluster_1 1 KRT17 1.4006 3.3761 0.9781
cluster_17 1 DLGAP1 0.9446 2.0746 0.9333
cluster_9 1 RBFOX1 0.5411 0.5564 0.5984
cluster_5 2 DCN 3.4342 3.9968 1
cluster_12 2 COL1A2 3.3823 3.6501 1
cluster_11 2 CD74 2.8945 3.0962 0.9259
cluster_2 2 KRT14 2.7272 4.311 0.9908
cluster_7 2 APOD 2.6142 3.1187 0.9195
cluster_18 2 NEB 2.6074 2.6631 1
cluster_14 2 SLPI 2.0088 2.9445 0.9286
cluster_6 2 SRGN 1.8981 2.1554 0.9701
cluster_10 2 IFI27 1.8622 2.0264 0.8851
cluster_13 2 RGS5 1.7514 1.8759 0.7692
cluster_3 2 TM4SF1 1.7389 3.4608 0.977
cluster_15 2 HLA-DRA 1.589 1.7906 0.8333
cluster_16 2 NNMT 1.4953 1.8543 0.9286
cluster_4 2 MT-CO3 1.4712 4.3189 0.981
cluster_8 2 CLDN4 1.398 2.7488 0.8417
cluster_1 2 LINC01505 1.1866 1.338 0.7281
cluster_17 2 FGF13 0.9442 1.3051 0.9333
cluster_9 2 CSMD1 0.3348 0.3448 0.4344
cluster_12 3 IGFBP5 3.2239 3.6345 0.9615
cluster_5 3 CXCL14 2.7315 3.1646 0.9368
cluster_11 3 HLA-DPA1 2.4944 2.6314 0.8519
cluster_7 3 CXCL14 2.4481 2.9365 0.8859

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
SACC-103-04-1A
Sample ID
SACC-103-04-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Salivary Adenoid Cystic Carcinoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Salivary Adenoid Cystic Carcinoma; Tumour
Tissue / Cell Source
Tumour
Modality
scRNA-seq (10X Genomics)
Cell Count
5,601
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: SACC-103; Cancer type: Salivary Adenoid Cystic Carcinoma; Source: NCBI (GEO); Accession: GSE217084; Country: CHN; Sample type: Tumour; Protocol: 10X Genomics; Matrix: SACC-103-04-1A.counts.matrix.tsv.gz (16.22 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=5601; raw genes=29143; Leiden clusters=18; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Salivary Adenoid Cystic Carcinoma
cancer type short
SACC
library count
1
library sample ids
SACC-103-04-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE217084; downloaded 2026-07-06
data accession
GSE217084
project id
SACC-103
sample type
Tumour
country
CHN
data source
NCBI (GEO)
accession no
GSE217084
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
SACC-103-04-1A.counts.matrix.tsv.gz
matrix file size bytes
17010257
matrix file size mb
16.22
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/SACC-103-04-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-04-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-04-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=5601; raw_genes=29143; leiden_clusters=18; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated