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SACC-103-05-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

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Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for SACC-103-05-1A, generated 2026-07-09 12:54:49 +0800.

1,999Cells analyzed
21Clusters
25,507Expressed genes
6389Mean UMI
2043Mean genes
5.456Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
Fibroblast_stroma 21 0.4157 1.6683 8
Epithelial_tumor 21 0.3722 1.785 8
Myeloid_APC 21 0.2387 1.1422 9
Endothelial 21 0.2366 0.9711 7
B_plasma 21 0.0847 0.524 7
T_NK_cytotoxic 21 0.0794 0.5816 10
Checkpoint_exhaustion 21 0.0498 0.1215 8
Proliferation 21 0.0492 0.1845 7
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 248 7127.8306 2504 5.2156
cluster_2 207 3326.7826 1362 6.0611
cluster_3 194 5769.1031 1981.5 5.0663
cluster_4 175 5147.6 2003 4.94
cluster_5 154 3251.7143 1437.5 6.6292
cluster_6 149 16891.604 3712 5.8729
cluster_7 131 6687.9924 2330 3.8114
cluster_8 115 6297.5565 2080 5.3658
cluster_9 97 5151.4536 1861 5.7701
cluster_10 71 12595.8873 3256 6.0961
cluster_11 67 5109.6866 1897 4.8377
cluster_12 60 8504.2 2365.5 4.5684
cluster_13 53 2545.9811 1171 6.5989
cluster_14 51 3190.8824 1581 5.9558
cluster_15 47 2040.5106 714 5.6803
cluster_16 45 2436.3333 792 6.2071
cluster_17 41 5448.2927 2097 4.8118
cluster_18 40 4703.6 1215.5 4.8329
cluster_19 25 15285.84 1437 5.2674
cluster_20 19 5100.7368 1832 6.342
cluster_21 10 3608.1 1168.5 6.565
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_19 1 SPRR3 5.1481 5.5019 1
cluster_6 1 KRT13 4.1592 5.0895 0.9933
cluster_18 1 ACTA1 3.9609 4.0576 0.975
cluster_11 1 CCL21 3.8157 3.8786 0.9403
cluster_12 1 HLA-DRA 3.3414 3.5366 0.9333
cluster_10 1 KRT15 3.3323 3.7156 0.9859
cluster_21 1 TPSB2 3.1765 3.1814 1
cluster_15 1 CXCL8 3.0917 3.4926 0.9574
cluster_7 1 CFD 2.9437 4.2801 0.9771
cluster_3 1 CFD 2.4744 3.7636 0.9485
cluster_9 1 TAGLN 2.3499 2.6384 0.9794
cluster_8 1 CCL14 2.2193 2.2714 0.8609
cluster_1 1 DCN 2.1999 3.5512 0.9919
cluster_4 1 DCN 2.1487 3.5848 0.9886
cluster_2 1 SRGN 1.8977 2.5275 0.9855
cluster_5 1 CXCR4 1.7576 2.1629 0.9675
cluster_17 1 CLDN5 1.7005 1.8555 0.878
cluster_14 1 PTPRM 1.687 2.0181 0.9608
cluster_20 1 CADM2 1.5487 1.5671 0.9474
cluster_13 1 IL7R 1.4152 1.802 0.8302
cluster_16 1 KRT14 1.2119 1.9957 0.8222
cluster_19 2 S100A9 4.8172 5.3901 1
cluster_6 2 SFN 3.6819 4.253 0.9933
cluster_10 2 KRT14 3.2454 3.9411 0.9859
cluster_18 2 MYL2 3.2115 3.281 0.975
cluster_12 2 CD74 3.1595 3.4987 0.9667
cluster_7 2 DCN 2.7672 4.2101 1
cluster_21 2 TPSAB1 2.4729 2.4753 1
cluster_15 2 S100A9 2.4673 3.0426 1
cluster_11 2 MMRN1 2.3351 2.3621 0.9254
cluster_1 2 PTGDS 2.134 2.3659 0.7984
cluster_9 2 MYL9 2.1256 2.471 0.9794
cluster_4 2 CFD 2.0383 3.3892 0.9371
cluster_8 2 SPARCL1 1.9648 3.2831 1
cluster_3 2 DCN 1.9617 3.3956 1
cluster_2 2 CXCR4 1.8959 2.2403 0.9662
cluster_17 2 IFI27 1.6628 2.1505 1
cluster_5 2 CCL5 1.6591 1.7671 0.961
cluster_14 2 MECOM 1.5864 1.6891 0.9216
cluster_20 2 APOE 1.4211 1.503 0.7368

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
SACC-103-05-1A
Sample ID
SACC-103-05-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Salivary Adenoid Cystic Carcinoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Salivary Adenoid Cystic Carcinoma; Normal
Tissue / Cell Source
Normal
Modality
scRNA-seq (10X Genomics)
Cell Count
9,271
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: SACC-103; Cancer type: Salivary Adenoid Cystic Carcinoma; Source: NCBI (GEO); Accession: GSE217084; Country: CHN; Sample type: Normal; Protocol: 10X Genomics; Matrix: SACC-103-05-1A.counts.matrix.tsv.gz (22.44 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=9271; raw genes=28312; Leiden clusters=21; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Salivary Adenoid Cystic Carcinoma
cancer type short
SACC
library count
1
library sample ids
SACC-103-05-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE217084; downloaded 2026-07-06
data accession
GSE217084
project id
SACC-103
sample type
Normal
country
CHN
data source
NCBI (GEO)
accession no
GSE217084
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
SACC-103-05-1A.counts.matrix.tsv.gz
matrix file size bytes
23531992
matrix file size mb
22.44
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/SACC-103-05-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-05-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-05-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=9271; raw_genes=28312; leiden_clusters=21; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated