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SACC-103-06-1A

De-identified Human Immune Atlas donor/sample detail for CancerSCEM 2.0. The record preserves available public metadata while avoiding direct identifiers.

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Donor-Level Analysis Results

Matrix-backed CancerSCEM donor analysis for SACC-103-06-1A, generated 2026-07-09 12:54:49 +0800.

1,996Cells analyzed
25Clusters
25,165Expressed genes
5577Mean UMI
1800Mean genes
2.714Mean mito %
Donor-level analysis panel
Cluster cell counts, cluster-by-program score heatmap, and top marker genes.
CancerSCEM Deep Analysis Donor JSON UMAP Coordinates UMAP Summary
Gene Program Summary
Program Clusters Mean Score Max Score Genes Used
Myeloid_APC 25 0.455 1.8479 9
B_plasma 25 0.3068 1.7092 8
Epithelial_tumor 25 0.2141 1.3476 8
T_NK_cytotoxic 25 0.1853 1.392 10
Endothelial 25 0.1324 1.0432 7
Fibroblast_stroma 25 0.1217 1.2694 8
Checkpoint_exhaustion 25 0.0668 0.1715 8
Proliferation 25 0.0366 0.0923 7
Cluster QC
Cluster Cells Mean UMI Median Genes Mean Mito %
cluster_1 368 1607.6005 637.5 0.7952
cluster_2 348 4702.3707 1737 2.9122
cluster_3 234 4825.0641 1933.5 3.1227
cluster_4 148 5739.277 2410.5 2.9998
cluster_5 106 5833.6887 1924 3.6445
cluster_6 106 11473.4906 3244 3.3379
cluster_7 93 1619.5591 905 3.7102
cluster_8 83 18114.7229 4129 4.1591
cluster_9 76 1481.8421 819.5 3.8152
cluster_11 65 7354.1846 1320 3.4478
cluster_10 65 13930.7692 3348 3.1661
cluster_12 54 9801.5741 2588 2.8367
cluster_13 46 1665.1522 762 2.5558
cluster_14 46 2499.0217 987.5 2.3333
cluster_15 37 14263.2703 2142 2.0087
cluster_16 27 7755.6296 2892 2.1825
cluster_17 23 6190.0435 2110 2.4393
cluster_18 20 1897.5 1142 2.5818
cluster_19 18 7448.6667 3012 4.7118
cluster_20 9 5629.3333 2213 3.6363
cluster_21 5 7994 2121 2.0297
cluster_24 5 1268.4 752 1.187
cluster_23 5 6923.8 1664 3.4535
cluster_22 5 1129.6 787 0.2489
Top Cluster Marker Genes
Cluster Rank Gene Score Mean Expr Detect Fraction
cluster_8 1 SFTPC 6.6855 7.5779 1
cluster_18 1 IGKC 4.4407 4.8067 0.95
cluster_5 1 TPSB2 4.308 4.4354 1
cluster_10 1 SCGB3A2 4.0286 4.4469 0.9231
cluster_25 1 TAGLN 3.9781 4.0167 1
cluster_6 1 HLA-DRA 3.7371 4.5596 1
cluster_20 1 CCL21 3.6371 3.6564 1
cluster_15 1 JCHAIN 3.5901 3.6643 0.7297
cluster_16 1 EMP2 3.5157 3.7477 1
cluster_17 1 MGP 3.2323 3.3929 0.9565
cluster_19 1 CFAP299 3.0999 3.1349 1
cluster_12 1 LYZ 2.7978 3.2649 0.9259
cluster_23 1 VWF 2.6823 2.7065 1
cluster_1 1 S100A9 2.6265 3.0975 0.9701
cluster_21 1 OASL 2.6136 2.7818 1
cluster_4 1 GNLY 2.6111 2.903 0.9189
cluster_22 1 KRT14 2.342 2.3423 1
cluster_24 1 IL3RA 2.2769 2.3673 1
cluster_7 1 SFTPC 2.0831 3.1565 0.9892
cluster_3 1 CCL5 1.7526 2.3061 0.9103
cluster_11 1 C1QA 1.6052 1.8856 0.6769
cluster_2 1 IL7R 1.3621 1.6182 0.8046
cluster_14 1 CLDN5 1.2582 1.2765 0.6087
cluster_13 1 EMP2 0.8892 1.1483 0.8261
cluster_9 1 IGLC2 0.4707 0.6823 0.4474
cluster_8 2 SFTPA2 5.3073 5.6496 1
cluster_25 2 ACTA2 3.8261 3.8567 1
cluster_10 2 SFTPB 3.4411 3.9554 0.9692
cluster_16 2 NCKAP5 3.3985 3.5456 1
cluster_6 2 CD74 3.1863 4.1622 0.9906
cluster_17 2 DCN 3.108 3.1608 0.8261
cluster_5 2 TPSAB1 3.091 3.1345 1
cluster_15 2 IGKC 2.9998 3.3547 0.7568
cluster_19 2 RP1 2.9611 3.0504 1
cluster_18 2 IGHG1 2.758 2.7968 1
cluster_23 2 LIFR 2.5392 2.6193 1
cluster_4 2 NKG7 2.527 2.9626 0.9865
cluster_21 2 ISG15 2.4099 2.6517 1
cluster_12 2 IFI30 2.3289 2.6819 0.9815
cluster_20 2 IGFBP7 2.2509 2.4628 1

Primary Metadata

Core de-identified metadata fields migrated from the ImmuneAging donor manifest.

Donor ID
SACC-103-06-1A
Sample ID
SACC-103-06-1A
Dataset
CancerSCEM 2.0
Cohort
CancerSCEM 2.0 Chinese subset; Salivary Adenoid Cystic Carcinoma
Age / Age Group
Pan-cancer Chinese cohort, per-donor ages not in CancerSCEM metadata
Sex
Not reported in public CancerSCEM metadata
Health Status
Salivary Adenoid Cystic Carcinoma; Normal
Tissue / Cell Source
Normal
Modality
scRNA-seq (10X Genomics)
Cell Count
8,429
Analysis Status
Matrix available; UMAP generated
UMAP Status
Ready
Metadata / Source Notes
Project ID: SACC-103; Cancer type: Salivary Adenoid Cystic Carcinoma; Source: NCBI (GEO); Accession: GSE217084; Country: CHN; Sample type: Normal; Protocol: 10X Genomics; Matrix: SACC-103-06-1A.counts.matrix.tsv.gz (19.73 MB); UMAP: Scanpy-generated donor-level UMAP preview; cells=8429; raw genes=27488; Leiden clusters=25; coordinates TSV and summary JSON are available online.; Age/sex not reported in public CancerSCEM metadata. Age source: CancerSCEM 2.0 database; 400 samples across 47 cancer types; donor-level age not included in download.csv

Additional Clinical / Source Fields

Supplementary source metadata retained from the migrated manifest where available.

cancer type
Salivary Adenoid Cystic Carcinoma
cancer type short
SACC
library count
1
library sample ids
SACC-103-06-1A
source reference
CancerSCEM 2.0 metadata table; data source=NCBI (GEO); accession=GSE217084; downloaded 2026-07-06
data accession
GSE217084
project id
SACC-103
sample type
Normal
country
CHN
data source
NCBI (GEO)
accession no
GSE217084
construction protocol
10X Genomics
transcriptome profile
Yes
metabolic profile
Yes
matrix status
Matrix available
matrix file name
SACC-103-06-1A.counts.matrix.tsv.gz
matrix file size bytes
20684879
matrix file size mb
19.73
matrix download url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_matrix/SACC-103-06-1A.counts.matrix.tsv.gz
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-06-1A.umap.tsv.gz
umap summary url
http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/SACC-103-06-1A.summary.json
umap pipeline
Scanpy 1.9.8 normalize_total/log1p/HVG/PCA/neighbors/leiden/umap; cells=8429; raw_genes=27488; leiden_clusters=25; generated 2026-07-07
matrix integrity status
Gzip readable; UMAP generated