Longevity & Aging
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Baboon
Species-level analysis ยท GSE227359
Baboon RNA-seq profile
Papio anubis
A reproducible descriptive view of the deposited GSE227359 raw-count matrix:
matrix-total CPM, sample composition, matrix-column sums, detected genes, high-expression
ranking, and PCA. No differential-expression or causal claim is made.
Deposited matrix
GSE227359
16,816 matrix rows
18 selected samples
3 represented tissues
12,442 median genes at CPM โฅ 1
17.2M median matrix column sum
Interpretation boundary.
These are descriptive summaries of deposited raw counts normalized by the sum of all published
matrix rows in each sample. Matrix-total CPM is not a substitute for a full differential-expression
workflow, and the paper-wide 371-sample integration is not reconstructed here.
Matrix overview
What is represented in this exact slice
Counts below refer only to the selected GSE227359 columns
.
01
Tissue representation
Number of biological sample columns per group
02
Matrix column sums
Per-sample total across all published gene rows
Range: 14.3Mโ26.4M counts.
This is a matrix-column sum, not an independently reported sequencing depth.
Expression structure
Sample separation and dominant transcripts
Visual summaries retain replicate-level information and expose sample counts.
03
Principal component view
Exploratory structure in log2(CPM + 1)
PC1 ยท 70.0%
PC2 ยท 28.8%
PCA of centered log2(matrix-total CPM + 1), using up to 500 highest-variance genes with nonzero matrix-total CPM in at least 20% of selected samples.
04
Top mean-expression genes
Ranked by mean matrix-total CPM
Alb
64,887.1 CPM
18/18 samples at CPM โฅ 1
ENSMUSG00000064370
19,235.6 CPM
18/18 samples at CPM โฅ 1
ENSMUSG00000064351
14,881.9 CPM
18/18 samples at CPM โฅ 1
ENSMUSG00000064367
13,414.8 CPM
18/18 samples at CPM โฅ 1
Eef1a1
9,828.1 CPM
18/18 samples at CPM โฅ 1
ENSMUSG00000064345
8,619.9 CPM
18/18 samples at CPM โฅ 1
Hp
7,061.1 CPM
18/18 samples at CPM โฅ 1
Fgb
6,955.6 CPM
18/18 samples at CPM โฅ 1
C3
6,714.1 CPM
18/18 samples at CPM โฅ 1
ENSMUSG00000064341
6,654.1 CPM
18/18 samples at CPM โฅ 1
Umod
6,021.3 CPM
17/18 samples at CPM โฅ 1
ENSMUSG00000064363
5,835.3 CPM
18/18 samples at CPM โฅ 1
Reproducible sample audit
Every selected matrix column
The table is the text equivalent for the sample-level visualizations above.
Sample
Species group
Tissue
Replicate
Matrix column sum
Genes at CPM โฅ 1
Baboon_1_Brain
Baboon
Brain
1
15,329,036
12,823
Baboon_2_Brain
Baboon
Brain
2
16,153,874
12,823
Baboon_3_Brain
Baboon
Brain
3
15,859,251
12,702
Baboon_4_Brain
Baboon
Brain
4
14,335,439
12,728
Baboon_5_Brain
Baboon
Brain
5
15,771,755
12,792
Baboon_6_Brain
Baboon
Brain
6
16,027,795
12,825
Baboon_1_Kidney
Baboon
Kidney
1
18,679,932
12,242
Baboon_2_Kidney
Baboon
Kidney
2
15,802,387
12,546
Baboon_3_Kidney
Baboon
Kidney
3
16,368,519
12,465
Baboon_4_Kidney
Baboon
Kidney
4
18,120,741
12,595
Baboon_5_Kidney
Baboon
Kidney
5
18,603,553
12,346
Baboon_6_Kidney
Baboon
Kidney
6
16,244,015
12,419
Baboon_1_Liver
Baboon
Liver
1
25,494,553
10,952
Baboon_2_Liver
Baboon
Liver
2
24,084,789
10,778
Baboon_3_Liver
Baboon
Liver
3
25,711,045
10,795
Baboon_4_Liver
Baboon
Liver
4
26,381,626
10,929
Baboon_5_Liver
Baboon
Liver
5
24,842,433
10,989
Baboon_6_Liver
Baboon
Liver
6
25,196,839
11,039
Method and provenance
How this page was calculated
Normalization
Matrix-total CPM
raw count / sum of all published matrix gene rows in the sample ร 1,000,000. A gene is called detected at CPM โฅ 1.
Ranking
Descriptive mean expression
Top genes are ranked by mean CPM across the exact selected sample columns; no p-values are calculated.
Source integrity
GSE227359
SHA-256: 02ccd190468eb1709362fb90021f9cf97e48e464f7732a2d895a72c3a29d0d32