Exact Table S1A source record ยท rank 25/41

House mouse RNA-seq sources

Mus musculus ยท Rodentia

Tissue replicate counts are reproduced from the paperโ€™s mammalian RNA-seq inventory. Accession rows below are reconciled directly to downloaded GEO SOFT or ENA records.

Inspect 26 source records โ†’ Open Igf1 gene profile โ†’ Open LACA content โ†’ Paper source โ†—
Study samples
26
Source datasets
2
Present tissues
6
Table S1A tissue inventory

Six tissues, exact replicate counts

Choose a present tissue to filter the accession table.

Brain

6 replicates

Cerebellum

3 replicates

Heart

3 replicates

Kidney

6 replicates

Liver

6 replicates

Testis

2 replicates

Icons are illustrative atlas graphics, not study specimen images.

Processed availability

What can be analyzed locally

Each route describes its own value type and permitted analytical scope.

GSE227358 ready

Unified raw-count analysis

GEO-supplied raw counts within one published matrix.

Comparable within this matrix only; this route does not merge native FPKM/RPKM values. Open GSE227358 analysis โ†’
GSE43013 ready

GSE43013 native expression

Within-species exploratory PCA/QC of the source-native expression matrix.

Native expression values and PCA coordinates are not cross-species or cross-dataset comparable. Open GSE43013 analysis โ†’
Downloaded catalog records

Paper and repository sources

GEO SOFT GSE30352

The evolution of gene expression levels in mammalian organs

Catalog samples
131
Selected here
115
Processed status
source-only
Open repository record โ†—
GEO SOFT GSE43013

Gene Expression Defines Natural Changes in Mammalian Lifespan

Catalog samples
141
Selected here
140
Processed status
native-expression
Open repository record โ†—
SOFT / ENA evidence

26 selected sample records

Every row links to its original repository record when the source catalog supplies one.

# Tissue Dataset / accession Source title Library Linked records
06 Brain GSE30352 GSM752614 โ†— mmu br F 1 Brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632155 โ†— SRA SRX081905 โ†—
04 Brain GSE30352 GSM752615 โ†— mmu br M 1 Brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632156 โ†— SRA SRX081906 โ†—
05 Brain GSE30352 GSM752616 โ†— mmu br M 2 Brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632157 โ†— SRA SRX081907 โ†—
01 Brain GSE43013 GSM1055111 โ†— mus.br.1 Mus musculus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831978 โ†— SRA SRX211701 โ†—
02 Brain GSE43013 GSM1055112 โ†— mus.br.2 Mus musculus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831979 โ†— SRA SRX211702 โ†—
03 Brain GSE43013 GSM1055113 โ†— mus.br.3 Mus musculus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831980 โ†— SRA SRX211703 โ†—
09 Cerebellum GSE30352 GSM752617 โ†— mmu cb F 1 Cerebellum RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632158 โ†— SRA SRX081908 โ†—
07 Cerebellum GSE30352 GSM752618 โ†— mmu cb M 1 Cerebellum RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632159 โ†— SRA SRX081909 โ†—
08 Cerebellum GSE30352 GSM752619 โ†— mmu cb M 2 Cerebellum RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632160 โ†— SRA SRX081910 โ†—
12 Heart GSE30352 GSM752620 โ†— mmu ht F 1 Heart RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632161 โ†— SRA SRX081911 โ†—
10 Heart GSE30352 GSM752621 โ†— mmu ht M 1 Heart RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632162 โ†— SRA SRX081912 โ†—
11 Heart GSE30352 GSM752622 โ†— mmu ht M 2 Heart RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632163 โ†— SRA SRX081913 โ†—
18 Kidney GSE30352 GSM752623 โ†— mmu kd F 1 Kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632164 โ†— SRA SRX081914 โ†—
16 Kidney GSE30352 GSM752624 โ†— mmu kd M 1 Kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632165 โ†— SRA SRX081915 โ†—
17 Kidney GSE30352 GSM752625 โ†— mmu kd M 2 Kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632166 โ†— SRA SRX081916 โ†—
13 Kidney GSE43013 GSM1055066 โ†— mus.kd.1 Mus musculus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831933 โ†— SRA SRX211656 โ†—
14 Kidney GSE43013 GSM1055067 โ†— mus.kd.2 Mus musculus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831934 โ†— SRA SRX211657 โ†—
15 Kidney GSE43013 GSM1055068 โ†— mus.kd.3 Mus musculus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831935 โ†— SRA SRX211658 โ†—
24 Liver GSE30352 GSM752626 โ†— mmu lv F 1 Liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632167 โ†— SRA SRX081917 โ†—
22 Liver GSE30352 GSM752627 โ†— mmu lv M 1 Liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632168 โ†— SRA SRX081918 โ†—
23 Liver GSE30352 GSM752628 โ†— mmu lv M 2 Liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632169 โ†— SRA SRX081919 โ†—
19 Liver GSE43013 GSM1055018 โ†— mus.lv.1 Mus musculus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831885 โ†— SRA SRX211608 โ†—
20 Liver GSE43013 GSM1055019 โ†— mus.lv.2 Mus musculus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831886 โ†— SRA SRX211609 โ†—
21 Liver GSE43013 GSM1055020 โ†— mus.lv.3 Mus musculus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831887 โ†— SRA SRX211610 โ†—
25 Testis GSE30352 GSM752629 โ†— mmu ts M 1 Testis RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632170 โ†— SRA SRX081920 โ†—
26 Testis GSE30352 GSM752630 โ†— mmu ts M 2 Testis RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN00632171 โ†— SRA SRX081921 โ†—
Exact catalog linkage

LACA record status

Back to all 41 mammals โ†’ Profiles gallery โ†’