American black bear
Exact Table S1A source record ยท rank 41/41

American black bear RNA-seq sources

Ursus americanus ยท Carnivora

Tissue replicate counts are reproduced from the paperโ€™s mammalian RNA-seq inventory. Accession rows below are reconciled directly to downloaded GEO SOFT or ENA records.

Inspect 7 source records โ†’ Open Igf1 gene profile โ†’ Paper source โ†—
Study samples
7
Source datasets
2
Present tissues
3
Table S1A tissue inventory

Six tissues, exact replicate counts

Choose a present tissue to filter the accession table.

Brain

2 replicates

Cerebellum

0 replicates

Not sampled

Heart

0 replicates

Not sampled

Kidney

3 replicates

Liver

2 replicates

Testis

0 replicates

Not sampled

Icons are illustrative atlas graphics, not study specimen images.

Processed availability

What can be analyzed locally

Each route describes its own value type and permitted analytical scope.

GSE227359 ready

Unified raw-count analysis

GEO-supplied raw counts within one published matrix.

Comparable within this matrix only; this route does not merge native FPKM/RPKM values. Open GSE227359 analysis โ†’
GSE43013 ready

GSE43013 native expression

Within-species exploratory PCA/QC of the source-native expression matrix.

Native expression values and PCA coordinates are not cross-species or cross-dataset comparable. Open GSE43013 analysis โ†’
Downloaded catalog records

Paper and repository sources

GEO SOFT GSE43013

Gene Expression Defines Natural Changes in Mammalian Lifespan

Catalog samples
141
Selected here
140
Processed status
native-expression
Open repository record โ†—
GEO SOFT GSE227359

Gene expression signatures of mammalian longevity across species

Catalog samples
48
Selected here
48
Processed status
existing-counts
Open repository record โ†—
SOFT / ENA evidence

7 selected sample records

Every row links to its original repository record when the source catalog supplies one.

# Tissue Dataset / accession Source title Library Linked records
01 Brain GSE43013 GSM1055127 โ†— uam.br.1 Ursus americanus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831994 โ†— SRA SRX211717 โ†—
02 Brain GSE43013 GSM1055128 โ†— uam.br.2 Ursus americanus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831995 โ†— SRA SRX211718 โ†—
04 Kidney GSE43013 GSM1055082 โ†— uam.kd.1 Ursus americanus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831949 โ†— SRA SRX211672 โ†—
05 Kidney GSE43013 GSM1055083 โ†— uam.kd.2 Ursus americanus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831950 โ†— SRA SRX211673 โ†—
03 Kidney GSE227359 GSM7098920 โ†— Kidney, bear, rep 1 Kidney RNA-Seq Illumina HiSeq 2000
BioSample SAMN33760421 โ†— SRA SRX19677062 โ†—
07 Liver GSE43013 GSM1055037 โ†— uam.lv.1 Ursus americanus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831904 โ†— SRA SRX211627 โ†—
06 Liver GSE227359 GSM7098921 โ†— Liver, bear, rep 1 Liver RNA-Seq Illumina HiSeq 2000
BioSample SAMN33760420 โ†— SRA SRX19677063 โ†—
Exact catalog linkage

LACA record status

Back to all 41 mammals โ†’ Profiles gallery โ†’