ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP013
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
931,417
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
77
Annotated cell-type groups
🫀
Tissues
49
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 17,699 | 1.9002229935679% | — | — | — |
| Chromaffin cells | 16,356 | 1.7560340856995% | — | — | — |
| Inhibitory neurons | 14,685 | 1.5766300164158% | — | — | — |
| Oligodendrocytes | 9,191 | 0.98677606270875% | — | — | — |
| Granule cells | 8,872 | 0.95252717096639% | — | — | — |
| Microglia | 6,494 | 0.69721725070511% | — | — | — |
| Astrocytes | 3,424 | 0.3676119289212% | — | — | — |
| Oligodendrocyte progenitor cells | 1,686 | 0.18101451873865% | — | — | — |
| Enteric glial cells | 601 | 0.064525341495807% | — | — | — |
| Purkinje cells | 551 | 0.059157176645906% | — | — | — |
| Schwann cells | 195 | 0.020935842914613% | — | — | — |
| Enteric neuronal progenitor cells | 127 | 0.013635138718748% | — | — | — |
| Glial cells | 55 | 0.0059049813348908% | — | — | — |
| T cells | 152,448 | 16.367319900753% | — | — | — |
| Macrophages | 50,179 | 5.3873828800634% | — | — | — |
| Plasma B cells | 31,900 | 3.4248891742367% | — | — | — |
| Monocytes | 30,576 | 3.2827401690113% | — | — | — |
| B cells | 18,457 | 1.9816043726924% | — | — | — |
| Thymocytes | 9,999 | 1.0735256066832% | — | — | — |
| Kupffer cells | 9,909 | 1.0638629099533% | — | — | — |
| Dendritic cells | 7,246 | 0.77795445004762% | — | — | — |
| Mast cells | 6,048 | 0.64933322024399% | — | — | — |
| Goblet cells | 3,247 | 0.34860862535255% | — | — | — |
| Hematopoietic stem and progenitor cells | 1,751 | 0.18799313304352% | — | — | — |
| Natural killer cells | 1,062 | 0.11401982141189% | — | — | — |
| Cycling T cells | 771 | 0.082777101985469% | — | — | — |
| Pancreas islet cells | 563 | 0.060445536209882% | — | — | — |
| Neutrophils | 541 | 0.058083543675926% | — | — | — |
| Natural killer T cells | 428 | 0.04595149111515% | — | — | — |
| Club cells | 197 | 0.021150569508609% | — | — | — |
| Cycling B cells | 161 | 0.01728549081668% | — | — | — |
| Basal cells | 32,857 | 3.5276358494638% | — | — | — |
| Enterocytes | 27,799 | 2.9845922932478% | — | — | — |
| Keratinocytes | 15,621 | 1.677122062406% | — | — | — |
| Proximal tubule cells | 9,856 | 1.0581726552124% | — | — | — |
| Hepatocytes | 9,457 | 1.0153346997102% | — | — | — |
| Fasciculata cells | 8,759 | 0.94039511840561% | — | — | — |
| Taste cells | 5,833 | 0.62625011138942% | — | — | — |
| Cycling basal cells | 4,743 | 0.50922411766158% | — | — | — |
| Glandular cells | 4,660 | 0.50031296401075% | — | — | — |
| Acinar cells | 4,350 | 0.46703034194136% | — | — | — |
| Follicular cells | 3,957 | 0.42483656622114% | — | — | — |
| Cycling epithelial cells | 3,663 | 0.39327175690373% | — | — | — |
| Luminal epithelial cells | 2,999 | 0.32198252769705% | — | — | — |
| Parietal cells | 2,576 | 0.27656785306689% | — | — | — |
| Connecting tubule cells | 1,532 | 0.16448057100096% | — | — | — |
| Cholangiocytes | 1,080 | 0.11595236075786% | — | — | — |
| Ciliated cells | 811 | 0.08707163386539% | — | — | — |
| Glomerulosa cells | 791 | 0.08492436792543% | — | — | — |
| Alveolar type 2 cells | 763 | 0.081918195609485% | — | — | — |
| Pancreas ductal cells | 743 | 0.079770929669525% | — | — | — |
| Cycling gastric epithelial cell | 692 | 0.074295401522626% | — | — | — |
| Endocrine cells | 522 | 0.056043641032964% | — | — | — |
| Mucous cells | 420 | 0.045092584739166% | — | — | — |
| Corticotropes | 278 | 0.029846996565448% | — | — | — |
| Serous cells | 264 | 0.028343910407476% | — | — | — |
| Neuroendocrine cells | 212 | 0.022761018963579% | — | — | — |
| Alveolar type 1 cells | 211 | 0.022653655666581% | — | — | — |
| Enteroendocrine cells | 158 | 0.016963400925686% | — | — | — |
| Progenitor-like epithelial cells | 109 | 0.011702599372784% | — | — | — |
| Epithelial cells | 66 | 0.007085977601869% | — | — | — |
| Fibroblasts | 135,322 | 14.528616076365% | — | — | — |
| Other stromal cells | 12,917 | 1.3868117073234% | — | — | — |
| Mesenchymal cells | 7,040 | 0.75583761086602% | — | — | — |
| Folliculostellate cells | 3,505 | 0.37630835597804% | — | — | — |
| Pericytes | 2,286 | 0.24543249693746% | — | — | — |
| Theca cells | 1,813 | 0.1946496574574% | — | — | — |
| Stellate cells | 1,413 | 0.15170433865819% | — | — | — |
| Adipocytes | 1,276 | 0.13699556696947% | — | — | — |
| Granulosa cells | 558 | 0.059908719724892% | — | — | — |
| Mesothelial cells | 65 | 0.006978614304871% | — | — | — |
| Smooth muscle cells | 48,827 | 5.2422277025221% | — | — | — |
| Cardiomyocytes | 6,699 | 0.7192267265897% | — | — | — |
| Satellite cells | 74 | 0.0079448839778531% | — | — | — |
| Endothelial cells | 155,862 | 16.733858196705% | — | — | — |
| Colonic stem cells | 1,900 | 0.20399026429623% | — | — | — |
| Intercalated cells | 659 | 0.070752412721692% | — | — | — |
77 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Endothelial cells | 155862 | 16.7339 | Endothelial cells | #00ACC1 |
| celltype | T cells | 152448 | 16.3673 | Immune cells | #E91E63 |
| celltype | Fibroblasts | 135322 | 14.5286 | Stromal cells | #26C6DA |
| celltype | Macrophages | 50179 | 5.3874 | Immune cells | #66BB6A |
| celltype | Smooth muscle cells | 48827 | 5.2422 | Muscle cells | #F44336 |
| celltype | Basal cells | 32857 | 3.5276 | Epithelial cells | #66BB6A |
| celltype | Plasma B cells | 31900 | 3.4249 | Immune cells | #9CCC65 |
| celltype | Monocytes | 30576 | 3.2827 | Immune cells | #5C6BC0 |
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