Species / Ungulates / Cattle

Cattle

Bos taurus
Ungulates
22 yrs
Max Lifespan
600 kg
Adult Weight
SP013
Species ID
30
Tissues
Statistics Analysis

Species Overview

Domesticated from the wild aurochs (Bos primigenius) approximately 10,000 years ago in the Near East, cattle (family Bovidae) are among the most economically important animals globally. Adults weigh 400โ€“1,100 kg depending on breed. Over 1,000 breeds exist, varying enormously in body size, horn shape, coat color, and production traits. They are large ruminants with a four-chambered stomach (rumen, reticulum, omasum, abomasum) harboring complex microbial communities that ferment cellulose. Herbivorous, they graze on grasses, hay, and silage. Cattle provide meat (beef/veal), milk (dairy), leather, and draft power. Global cattle population is ~1 billion. They are significant contributors to greenhouse gas emissions (methane from enteric fermentation). In biomedical research, they are used in reproductive biology (IVF was first developed in cattle), immunology, and prion disease (BSE). Females have a ~283-day gestation, typically one calf. The genome was sequenced in 2009 (2n=60). Lifespan: 18โ€“25 years. They hold immense cultural significance across many civilizations.

Integrated UMAP Atlas & Gene Explorer

Data processing BioID-standardised Input: Processed matrix Methods Per-dataset records
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Biological System Atlas
9Systems
Cardiovascular system
Cardiovascular system
ID: sys03
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Digestive system
Digestive system
ID: sys05
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Endocrine system
Endocrine system
ID: sys07
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Immune system
Immune system
ID: sys02
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Nervous system
Nervous system
ID: sys01
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Reproductive system
Reproductive system
ID: sys06
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Respiratory system
Respiratory system
ID: sys04
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Sensory system
Sensory system
ID: sys10
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Urinary system
Urinary system
ID: sys09
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Tissue-Level Cell Distribution
30Tissues
Adrenal gland
Adrenal gland
ID: sys07tis02System: Endocrine system
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Bone marrow
Bone marrow
ID: sys02tis02System: Immune system
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Cerebellum
Cerebellum
ID: sys01tis09System: Nervous system
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Cisterna chyli
ID: sys02tis07System: Immune system
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Colon
Colon
ID: sys05tis07System: Digestive system
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Duodenum
Duodenum
ID: sys05tis06System: Digestive system
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Esophagus
Esophagus
ID: sys05tis05System: Digestive system
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Fallopian tube
Fallopian tube
ID: sys06tis07System: Reproductive system
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Gallbladder
Gallbladder
ID: sys05tis02System: Digestive system
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Heart
Heart
ID: sys03tis03System: Cardiovascular system
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Hypothalamus
Hypothalamus
ID: sys01tis07System: Nervous system
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Kidney
Kidney
ID: sys09tis01System: Urinary system
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Liver
Liver
ID: sys05tis01System: Digestive system
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Lung
Lung
ID: sys04tis01System: Respiratory system
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Lymph node
Lymph node
ID: sys02tis05System: Immune system
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Mammary gland
Mammary gland
ID: sys06tis10System: Reproductive system
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Ovary
Ovary
ID: sys06tis06System: Reproductive system
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Pancreas
Pancreas
ID: sys05tis04System: Digestive system
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PBMC
PBMC
ID: sys02tis03System: Immune system
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Pituitary gland
Pituitary gland
ID: sys07tis01System: Endocrine system
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Salivary gland
Salivary gland
ID: sys05tis08System: Digestive system
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Skin
Skin
ID: sys10tis02System: Sensory system
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Spinal cord
Spinal cord
ID: sys01tis20System: Nervous system
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Spleen
Spleen
ID: sys02tis04System: Immune system
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Stomach
Stomach
ID: sys05tis03System: Digestive system
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Thymus
Thymus
ID: sys02tis01System: Immune system
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Thyroid gland
Thyroid gland
ID: sys07tis03System: Endocrine system
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Tongue
Tongue
ID: sys05tis09System: Digestive system
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Uterus
Uterus
ID: sys06tis08System: Reproductive system
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Whole brain
Whole brain
ID: sys01tis16System: Nervous system
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Cellular Composition Explorer
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Alveolar type 2 cells
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Cholangiocytes
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Ciliated cells
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Colonic stem cells
Colonic stem cells
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Cycling B cells
Cycling B cells
Major: Immune cells
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Cycling epithelial cells
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Cycling gastric epithelial cell
Cycling gastric epithelial cell
Major: Epithelial cellโ€ฆ
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Cycling luminal epithelial cells
Cycling luminal epithelial cells
Major: Epithelial cellโ€ฆ
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Cycling T cells
Cycling T cells
Major: Immune cells
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Dendritic cells
Dendritic cells
Major: Immune cells
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Distal convoluted tubule cells
Distal convoluted tubule cells
Major: Epithelial cellโ€ฆ
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Endocrine cells
Endocrine cells
Major: Epithelial cellโ€ฆ
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Endothelial cells
Endothelial cells
Major: Endothelial celโ€ฆ
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Enteric glial cells
Enteric glial cells
Major: Neural cells
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Enteric neuronal progenitor cells
Enteric neuronal progenitor cells
Major: Neural cells
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Enteric neurons
Enteric neurons
Major: Neural cells
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Enterocytes
Major: Epithelial cellโ€ฆ
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Enteroendocrine cells
Major: Epithelial cellโ€ฆ
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Excitatory neurons
Major: Neural cells
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Fasciculata cells
Major: Epithelial cellโ€ฆ
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Fibroblasts
Major: Stromal cells
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Follicular cells
Major: Epithelial cellโ€ฆ
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Folliculostellate cells
Major: Stromal cells
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Glandular cells
Major: Epithelial cellโ€ฆ
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Glomerulosa cells
Glomerulosa cells
Major: Epithelial cellโ€ฆ
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Goblet cells
Major: Epithelial cellโ€ฆ
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Gonadotropes
Gonadotropes
Major: Epithelial cellโ€ฆ
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Granule cells
Granule cells
Major: Neural cells
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Granulosa cells
Granulosa cells
Major: Stromal cells
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Hepatocytes
Major: Epithelial cellโ€ฆ
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Inhibitory neurons
Inhibitory neurons
Major: Neural cells
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Intercalated cells
Intercalated cells
Major: Epithelial cellโ€ฆ
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Keratinocytes
Keratinocytes
Major: Epithelial cellโ€ฆ
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Kupffer cells
Kupffer cells
Major: Immune cells
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Lactotropes
Lactotropes
Major: Epithelial cellโ€ฆ
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Luminal epithelial cells
Luminal epithelial cells
Major: Epithelial cellโ€ฆ
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Macrophages
Macrophages
Major: Immune cells
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Mast cells
Mast cells
Major: Immune cells
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Mesenchymal cells
Mesenchymal cells
Major: Stromal cells
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Microglia
Microglia
Major: Immune cells
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Monocytes
Monocytes
Major: Immune cells
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Mucous cells
Mucous cells
Major: Epithelial cellโ€ฆ
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Myelocytes
Myelocytes
Major: Immune cells
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Natural killer cells
Natural killer cells
Major: Immune cells
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Natural killer T cells
Natural killer T cells
Major: Immune cells
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Neuroendocrine cells
Neuroendocrine cells
Major: Epithelial cellโ€ฆ
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Oligodendrocyte progenitor cells
Oligodendrocyte progenitor cells
Major: Neural cells
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Oligodendrocytes
Oligodendrocytes
Major: Neural cells
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Other stromal cells
Other stromal cells
Major: Stromal cells
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Oviduct epithelial cells
Oviduct epithelial cells
Major: Epithelial cellโ€ฆ
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Pancreas ductal cells
Pancreas ductal cells
Major: Epithelial cellโ€ฆ
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Pancreas islet cells
Pancreas islet cells
Major: Epithelial cellโ€ฆ
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Parietal cells
Parietal cells
Major: Epithelial cellโ€ฆ
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Pericytes
Pericytes
Major: Stromal cells
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Plasma B cells
Plasma B cells
Major: Immune cells
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Podocytes
Podocytes
Major: Epithelial cellโ€ฆ
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Principal cells
Principal cells
Major: Epithelial cellโ€ฆ
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Progenitor-like epithelial cells
Progenitor-like epithelial cells
Major: Epithelial cellโ€ฆ
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Proximal tubule cells
Proximal tubule cells
Major: Epithelial cellโ€ฆ
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Purkinje cells
Purkinje cells
Major: Neural cells
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Schwann cells
Schwann cells
Major: Neural cells
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Serous cells
Serous cells
Major: Epithelial cellโ€ฆ
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Smooth muscle cells
Smooth muscle cells
Major: Muscle cells
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Stellate cells
Stellate cells
Major: Stromal cells
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T cells
T cells
Major: Immune cells
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Taste cells
Taste cells
Major: Epithelial cellโ€ฆ
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Thymocytes
Thymocytes
Abbr: TMajor: Immune cells
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View Datasets

Species-Related Single-Cell Datasets
86Datasets
DataID โ†• Latin Name โ†• Folder ID โ†• Tissue โ†• Title โ†• Detail QC Analysis
Data0046 Bos taurus Bos_taurus_40913183_2025_Rank033 Hypothalamus A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0030 Bos taurus Bos_taurus_40913183_2025_Rank052 Cerebellum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0031 Bos taurus Bos_taurus_40913183_2025_Rank070 Cerebellum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0032 Bos taurus Bos_taurus_40913183_2025_Rank050 Cerebral_cortex A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0033 Bos taurus Bos_taurus_40913183_2025_Rank051 Cerebral_cortex A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0069 Bos taurus Bos_taurus_40913183_2025_Rank069 Medulla_oblongata A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0098 Bos taurus Bos_taurus_40913183_2025_Rank073 Thymus A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0026 Bos taurus Bos_taurus_40913183_2025_Rank013 Bone Marrow A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0027 Bos taurus Bos_taurus_40913183_2025_Rank040 Bone_marrow A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0024 Bos taurus Bos_taurus_35499046_2021_Rank002 Blood Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0025 Bos taurus Bos_taurus_40913183_2025_Rank020 Blood A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0094 Bos taurus Bos_taurus_40913183_2025_Rank004 Spleen A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0095 Bos taurus Bos_taurus_40913183_2025_Rank063 Spleen A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0034 Bos taurus Bos_taurus_40913183_2025_Rank011 Cervical lymph node A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0035 Bos taurus Bos_taurus_40913183_2025_Rank049 Cervical_lymph_node A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0036 Bos taurus Bos_taurus_40913183_2025_Rank003 Cisterna chyli A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0037 Bos taurus Bos_taurus_40913183_2025_Rank035 Cisterna chyli A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0044 Bos taurus Bos_taurus_40913183_2025_Rank064 Heart A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0045 Bos taurus Bos_taurus_40913183_2025_Rank067 Heart A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0062 Bos taurus Bos_taurus_40913183_2025_Rank044 Lung A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0063 Bos taurus Bos_taurus_40913183_2025_Rank057 Lung A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0057 Bos taurus Bos_taurus_35499046_2021_Rank005 Liver A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0058 Bos taurus Bos_taurus_40913183_2025_Rank015 Liver Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0059 Bos taurus Bos_taurus_40913183_2025_Rank021 Liver A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0060 Bos taurus Bos_taurus_40913183_2025_Rank030 Liver A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0061 Bos taurus Bos_taurus_40913183_2025_Rank045 Liver A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0023 Bos taurus Bos_taurus_40913183_2025_Rank071 Bile_duct A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0018 Bos taurus Bos_taurus_35499046_2021_Rank001 Abomasum Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0070 Bos taurus Bos_taurus_35499046_2021_Rank006 Omasum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0083 Bos taurus Bos_taurus_35499046_2021_Rank008 Reticulum Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0086 Bos taurus Bos_taurus_35499046_2021_Rank009 Rumen Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0019 Bos taurus Bos_taurus_40913183_2025_Rank038 Abomasum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0020 Bos taurus Bos_taurus_40913183_2025_Rank072 Abomasum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0071 Bos taurus Bos_taurus_40913183_2025_Rank014 Omasum Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0072 Bos taurus Bos_taurus_40913183_2025_Rank042 Omasum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0084 Bos taurus Bos_taurus_40913183_2025_Rank054 Reticulum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0085 Bos taurus Bos_taurus_40913183_2025_Rank059 Reticulum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0076 Bos taurus Bos_taurus_40913183_2025_Rank041 Pancreas A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0077 Bos taurus Bos_taurus_40913183_2025_Rank047 Pancreas A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0042 Bos taurus Bos_taurus_40913183_2025_Rank036 Esophage A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0043 Bos taurus Bos_taurus_40913183_2025_Rank060 Esophage A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0047 Bos taurus Bos_taurus_35499046_2021_Rank003 Ileum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0040 Bos taurus Bos_taurus_40913183_2025_Rank017 Duodenum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0041 Bos taurus Bos_taurus_40913183_2025_Rank068 Duodenum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0048 Bos taurus Bos_taurus_40913183_2025_Rank009 Ileum Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0049 Bos taurus Bos_taurus_40913183_2025_Rank029 Ileum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0080 Bos taurus Bos_taurus_35499046_2021_Rank007 Rectum Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0028 Bos taurus Bos_taurus_40913183_2025_Rank022 Cecum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0029 Bos taurus Bos_taurus_40913183_2025_Rank053 Cecum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0038 Bos taurus Bos_taurus_40913183_2025_Rank008 Colon A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0039 Bos taurus Bos_taurus_40913183_2025_Rank034 Colon A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0081 Bos taurus Bos_taurus_40913183_2025_Rank039 Rectum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0082 Bos taurus Bos_taurus_40913183_2025_Rank074 Rectum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0091 Bos taurus Bos_taurus_35499046_2021_Rank010 Salivary gland Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0101 Bos taurus Bos_taurus_40913183_2025_Rank065 Tongue_circumvallate A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0103 Bos taurus Bos_taurus_40913183_2025_Rank061 Tongue_fungal A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0073 Bos taurus Bos_taurus_40913183_2025_Rank056 Ovary A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0074 Bos taurus Bos_taurus_40913183_2025_Rank076 Ovary A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0075 Bos taurus Bos_taurus_40913183_2025_Rank012 Oviduct A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0050 Bos taurus Bos_taurus_40913183_2025_Rank032 Intima of corpus uteri A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0051 Bos taurus Bos_taurus_40913183_2025_Rank006 Intima of uterine horn A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0052 Bos taurus Bos_taurus_40913183_2025_Rank016 Intima of uterine horn A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0065 Bos taurus Bos_taurus_35499046_2021_Rank004 Mammary gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0064 Bos taurus Bos_taurus_40913183_2025_Rank002 Mammary duct A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0066 Bos taurus Bos_taurus_40913183_2025_Rank058 Mammary_duct Cross-tissue single-cell transcriptomic landscape reveals the key cell subtypes and their potential roles in the nutrient absorption and metabolism in dairy cattle. QC Analysis
Data0067 Bos taurus Bos_taurus_40913183_2025_Rank043 Mammary_parenchyma A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0068 Bos taurus Bos_taurus_40913183_2025_Rank055 Mammary_parenchyma A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0078 Bos taurus Bos_taurus_40913183_2025_Rank001 Pituitary gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0079 Bos taurus Bos_taurus_40913183_2025_Rank048 Pituitary_gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0021 Bos taurus Bos_taurus_40913183_2025_Rank037 Adrenal gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0022 Bos taurus Bos_taurus_40913183_2025_Rank046 Adrenal_gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0099 Bos taurus Bos_taurus_40913183_2025_Rank025 Thyroid A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0055 Bos taurus Bos_taurus_40913183_2025_Rank028 Kidney A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0056 Bos taurus Bos_taurus_40913183_2025_Rank031 Kidney A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0092 Bos taurus Bos_taurus_40913183_2025_Rank018 Skin A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0093 Bos taurus Bos_taurus_40913183_2025_Rank062 Skin A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0053 Bos taurus Bos_taurus_40913183_2025_Rank005 Jejunum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0054 Bos taurus Bos_taurus_40913183_2025_Rank007 Jejunum A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0087 Bos taurus Bos_taurus_40913183_2025_Rank027 Rumen_Muscle A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0088 Bos taurus Bos_taurus_40913183_2025_Rank075 Rumen_muscle A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0089 Bos taurus Bos_taurus_40913183_2025_Rank010 Rumen_Papillary A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0090 Bos taurus Bos_taurus_40913183_2025_Rank026 Rumen_Papillary A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0096 Bos taurus Bos_taurus_40913183_2025_Rank019 Sublingual gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0097 Bos taurus Bos_taurus_40913183_2025_Rank066 Sublingual_gland A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0100 Bos taurus Bos_taurus_40913183_2025_Rank024 Tongue_Circumvallate A multi-tissue single-cell expression atlas in cattle. QC Analysis
Data0102 Bos taurus Bos_taurus_40913183_2025_Rank023 Tongue_Fungal A multi-tissue single-cell expression atlas in cattle. QC Analysis

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