ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
147,697
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
7
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Schwann cells | 96 | 0.064997934961441% | — | — | — |
| T cells | 25,768 | 17.446529042567% | — | — | — |
| Monocytes | 23,080 | 15.626586863647% | — | — | — |
| B cells | 14,633 | 9.9074456488622% | — | — | — |
| Thymocytes | 9,999 | 6.7699411633276% | — | — | — |
| Macrophages | 9,888 | 6.6947873010285% | — | — | — |
| Plasma B cells | 4,752 | 3.2173977805913% | — | — | — |
| Hematopoietic stem and progenitor cells | 1,751 | 1.1855352512238% | — | — | — |
| Mast cells | 1,609 | 1.0893924724267% | — | — | — |
| Cycling T cells | 586 | 0.3967582279938% | — | — | — |
| Neutrophils | 541 | 0.36629044598062% | — | — | — |
| Natural killer cells | 433 | 0.293167769149% | — | — | — |
| Dendritic cells | 382 | 0.25863761620074% | — | — | — |
| Cycling B cells | 161 | 0.10900695342492% | — | — | — |
| Fibroblasts | 22,468 | 15.212225028267% | — | — | — |
| Other stromal cells | 12,917 | 8.7456075614264% | — | — | — |
| Mesenchymal cells | 5,613 | 3.8003480097768% | — | — | — |
| Adipocytes | 1,264 | 0.85580614365898% | — | — | — |
| Pericytes | 75 | 0.050779636688626% | — | — | — |
| Smooth muscle cells | 5,421 | 3.6703521398539% | — | — | — |
| Endothelial cells | 6,260 | 4.238407008944% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 25768 | 17.4465 | Immune cells | #E91E63 |
| celltype | Monocytes | 23080 | 15.6266 | Immune cells | #5C6BC0 |
| celltype | Fibroblasts | 22468 | 15.2122 | Stromal cells | #26C6DA |
| celltype | B cells | 14633 | 9.9074 | Immune cells | #26A69A |
| celltype | Other stromal cells | 12917 | 8.7456 | Stromal cells | #008B8B |
| celltype | Thymocytes | 9999 | 6.7699 | Immune cells | #42A5F5 |
| celltype | Macrophages | 9888 | 6.6948 | Immune cells | #66BB6A |
| celltype | Endothelial cells | 6260 | 4.2384 | Endothelial cells | #00ACC1 |
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