ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
403,752
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
42
Annotated cell-type groups
🫀
Tissues
19
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 601 | 0.14885375180804% | — | — | — |
| Enteric neuronal progenitor cells | 127 | 0.031454952545127% | — | — | — |
| Schwann cells | 56 | 0.013869900334859% | — | — | — |
| Glial cells | 55 | 0.013622223543165% | — | — | — |
| T cells | 79,710 | 19.742317065922% | — | — | — |
| Plasma B cells | 27,056 | 6.7011432760705% | — | — | — |
| Macrophages | 18,844 | 4.6672214626801% | — | — | — |
| Kupffer cells | 9,909 | 2.454229328895% | — | — | — |
| Monocytes | 5,210 | 1.2903960847253% | — | — | — |
| B cells | 3,733 | 0.92457746339337% | — | — | — |
| Mast cells | 3,288 | 0.81436129108958% | — | — | — |
| Goblet cells | 3,247 | 0.80420654263013% | — | — | — |
| Dendritic cells | 2,960 | 0.73312330341398% | — | — | — |
| Pancreas islet cells | 563 | 0.13944203372367% | — | — | — |
| Natural killer T cells | 428 | 0.10600566684499% | — | — | — |
| Cycling T cells | 185 | 0.045820206463374% | — | — | — |
| Basal cells | 32,698 | 8.0985357348075% | — | — | — |
| Enterocytes | 27,799 | 6.885167132299% | — | — | — |
| Hepatocytes | 9,457 | 2.3422794190493% | — | — | — |
| Taste cells | 5,833 | 1.4446987259506% | — | — | — |
| Cycling basal cells | 4,743 | 1.1747310230042% | — | — | — |
| Glandular cells | 4,660 | 1.1541738492936% | — | — | — |
| Acinar cells | 4,350 | 1.0773940438685% | — | — | — |
| Cycling epithelial cells | 3,663 | 0.9072400879748% | — | — | — |
| Parietal cells | 2,576 | 0.63801541540352% | — | — | — |
| Cholangiocytes | 1,080 | 0.26749093502942% | — | — | — |
| Keratinocytes | 920 | 0.2278626483584% | — | — | — |
| Pancreas ductal cells | 743 | 0.18402385622858% | — | — | — |
| Cycling gastric epithelial cell | 692 | 0.17139233985219% | — | — | — |
| Endocrine cells | 522 | 0.12928728526422% | — | — | — |
| Mucous cells | 420 | 0.10402425251144% | — | — | — |
| Serous cells | 264 | 0.065386673007193% | — | — | — |
| Neuroendocrine cells | 212 | 0.052507479839109% | — | — | — |
| Enteroendocrine cells | 158 | 0.039132933087638% | — | — | — |
| Fibroblasts | 56,066 | 13.886247003111% | — | — | — |
| Stellate cells | 1,413 | 0.3499673066635% | — | — | — |
| Pericytes | 830 | 0.20557173710595% | — | — | — |
| Mesenchymal cells | 194 | 0.048049297588619% | — | — | — |
| Adipocytes | 12 | 0.0029721215003269% | — | — | — |
| Smooth muscle cells | 7,049 | 1.7458737046504% | — | — | — |
| Endothelial cells | 79,526 | 19.69674453625% | — | — | — |
| Colonic stem cells | 1,900 | 0.47058590421843% | — | — | — |
42 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 79710 | 19.7423 | Immune cells | #E91E63 |
| celltype | Endothelial cells | 79526 | 19.6967 | Endothelial cells | #00ACC1 |
| celltype | Fibroblasts | 56066 | 13.8862 | Stromal cells | #26C6DA |
| celltype | Basal cells | 32698 | 8.0985 | Epithelial cells | #66BB6A |
| celltype | Enterocytes | 27799 | 6.8852 | Epithelial cells | #9CCC65 |
| celltype | Plasma B cells | 27056 | 6.7011 | Immune cells | #9CCC65 |
| celltype | Macrophages | 18844 | 4.6672 | Immune cells | #66BB6A |
| celltype | Kupffer cells | 9909 | 2.4542 | Immune cells | #26A69A |
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