ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys06
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013_sys/sys06/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
151,461
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
20
Annotated cell-type groups
🫀
Tissues
8
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 37,224 | 24.576623685305% | — | — | — |
| Macrophages | 7,091 | 4.6817332514641% | — | — | — |
| Dendritic cells | 3,904 | 2.5775612203802% | — | — | — |
| Monocytes | 2,286 | 1.509299423614% | — | — | — |
| Mast cells | 703 | 0.46414588573956% | — | — | — |
| Natural killer cells | 629 | 0.41528842408277% | — | — | — |
| Plasma B cells | 92 | 0.060741709086828% | — | — | — |
| B cells | 91 | 0.060081473118493% | — | — | — |
| Luminal epithelial cells | 2,999 | 1.9800476690369% | — | — | — |
| Ciliated cells | 346 | 0.22844164504394% | — | — | — |
| Basal cells | 159 | 0.10497751896528% | — | — | — |
| Progenitor-like epithelial cells | 109 | 0.071965720548524% | — | — | — |
| Epithelial cells | 66 | 0.043575573910115% | — | — | — |
| Fibroblasts | 24,596 | 16.23916387717% | — | — | — |
| Theca cells | 1,813 | 1.1970078105915% | — | — | — |
| Granulosa cells | 558 | 0.36841167033098% | — | — | — |
| Pericytes | 66 | 0.043575573910115% | — | — | — |
| Mesothelial cells | 65 | 0.04291533794178% | — | — | — |
| Smooth muscle cells | 28,998 | 19.145522609781% | — | — | — |
| Endothelial cells | 39,666 | 26.188919919979% | — | — | — |
20 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Endothelial cells | 39666 | 26.1889 | Endothelial cells | #00ACC1 |
| celltype | T cells | 37224 | 24.5766 | Immune cells | #E91E63 |
| celltype | Smooth muscle cells | 28998 | 19.1455 | Muscle cells | #F44336 |
| celltype | Fibroblasts | 24596 | 16.2392 | Stromal cells | #26C6DA |
| celltype | Macrophages | 7091 | 4.6817 | Immune cells | #66BB6A |
| celltype | Dendritic cells | 3904 | 2.5776 | Immune cells | #7E57C2 |
| celltype | Luminal epithelial cells | 2999 | 1.98 | Epithelial cells | #4682B4 |
| celltype | Monocytes | 2286 | 1.5093 | Immune cells | #5C6BC0 |
First 8 rows