ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
60,843
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
13
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 16,356 | 26.882303633943% | — | — | — |
| Microglia | 6,341 | 10.421905560212% | — | — | — |
| Schwann cells | 43 | 0.070673701165294% | — | — | — |
| Macrophages | 3,568 | 5.8642736222737% | — | — | — |
| T cells | 712 | 1.1702250053416% | — | — | — |
| Fasciculata cells | 8,759 | 14.396068569926% | — | — | — |
| Follicular cells | 3,957 | 6.5036240816528% | — | — | — |
| Glomerulosa cells | 791 | 1.3000673865523% | — | — | — |
| Corticotropes | 278 | 0.45691369590586% | — | — | — |
| Folliculostellate cells | 3,505 | 5.7607284321943% | — | — | — |
| Fibroblasts | 3,449 | 5.6686882632349% | — | — | — |
| Smooth muscle cells | 1,948 | 3.2016830202324% | — | — | — |
| Endothelial cells | 11,136 | 18.302845027366% | — | — | — |
13 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Chromaffin cells | 16356 | 26.8823 | Neural cells | #78909C |
| celltype | Endothelial cells | 11136 | 18.3028 | Endothelial cells | #00ACC1 |
| celltype | Fasciculata cells | 8759 | 14.3961 | Epithelial cells | #4B0082 |
| celltype | Microglia | 6341 | 10.4219 | Neural cells | #FF7043 |
| celltype | Follicular cells | 3957 | 6.5036 | Epithelial cells | #008B8B |
| celltype | Macrophages | 3568 | 5.8643 | Immune cells | #66BB6A |
| celltype | Folliculostellate cells | 3505 | 5.7607 | Stromal cells | #32CD32 |
| celltype | Fibroblasts | 3449 | 5.6687 | Stromal cells | #26C6DA |
First 8 rows