ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis03
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP013_tis/sys05tis03/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
95,585
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
19
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 315 | 0.32954961552545% | — | — | — |
| T cells | 11,704 | 12.244599047968% | — | — | — |
| Macrophages | 4,817 | 5.0394936444003% | — | — | — |
| B cells | 666 | 0.69676204425381% | — | — | — |
| Plasma B cells | 593 | 0.62039022859235% | — | — | — |
| Monocytes | 320 | 0.33478056180363% | — | — | — |
| Basal cells | 11,261 | 11.781137207721% | — | — | — |
| Glandular cells | 4,660 | 4.8752419312654% | — | — | — |
| Parietal cells | 2,576 | 2.6949835225192% | — | — | — |
| Cycling epithelial cells | 1,658 | 1.7345817858451% | — | — | — |
| Cycling gastric epithelial cell | 692 | 0.72396296490035% | — | — | — |
| Endocrine cells | 522 | 0.54611079144217% | — | — | — |
| Mucous cells | 257 | 0.26887063869854% | — | — | — |
| Neuroendocrine cells | 161 | 0.16843647015745% | — | — | — |
| Fibroblasts | 23,773 | 24.871057174243% | — | — | — |
| Pericytes | 62 | 0.064863733849453% | — | — | — |
| Adipocytes | 12 | 0.012554271067636% | — | — | — |
| Smooth muscle cells | 1,975 | 2.0662237798818% | — | — | — |
| Endothelial cells | 29,561 | 30.926400585866% | — | — | — |
19 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Endothelial cells | 29561 | 30.9264 | Endothelial cells | #00ACC1 |
| celltype | Fibroblasts | 23773 | 24.8711 | Stromal cells | #26C6DA |
| celltype | T cells | 11704 | 12.2446 | Immune cells | #E91E63 |
| celltype | Basal cells | 11261 | 11.7811 | Epithelial cells | #66BB6A |
| celltype | Macrophages | 4817 | 5.0395 | Immune cells | #66BB6A |
| celltype | Glandular cells | 4660 | 4.8752 | Epithelial cells | #008080 |
| celltype | Parietal cells | 2576 | 2.695 | Epithelial cells | #00ACC1 |
| celltype | Smooth muscle cells | 1975 | 2.0662 | Muscle cells | #F44336 |
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