ESC close ยท โ† โ†’ navigate
ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics Tissue › sys05tis06

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP013 Tissue: sys05tis06 Generated: 2026-08-08 07:47
๐Ÿ“ analysis_results_v2/SP013_tis/sys05tis06/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
🔬
86,694
Total Cells
🧬
16,720
Total Genes
🔷
15
Cell Types
🫀
3
Tissues
📦
N/A
Samples
N/A: Not exported by the post-QC descriptive statistics pipeline.
📊
N/A
Clusters
N/A: Not exported by the post-QC descriptive statistics pipeline.
⚡
N/A
Mito %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🧪
N/A
Ribo %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🚫
N/A
Cells Filtered
N/A: Validated Raw Count Thresholds Not Available.
✅
N/A
Pass Rate
N/A: Validated Raw Count Thresholds Not Available.
๐Ÿ“‹ Overview ๐Ÿ“Š QC Metrics ๐Ÿ—บ๏ธ UMAP ๐Ÿงฉ Composition ๐Ÿงฌ Markers ๐Ÿ“ˆ Gene Stats ๐Ÿ“ Data 2
📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬
Total Cells
86,694
Cells represented in this release
🧬
Total Genes
16,720
Genes represented in the source matrix
🔷
Cell Types
15
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

๐Ÿ”ท Cell Type / Cluster Breakdown

NameCells%Med GenesMed CountsMed Mito%
Enteric glial cells2860.32989595589083%———
Enteric neuronal progenitor cells1270.14649226013334%———
T cells23,15326.706577156435%———
Plasma B cells15,17717.506401827116%———
Macrophages7,1958.2993056036173%———
Mast cells2,5082.8929337670427%———
Goblet cells1,1301.3034350704778%———
Dendritic cells1750.20185941356957%———
Enterocytes22,68426.165593928069%———
Cycling epithelial cells1,4221.6402519205481%———
Enteroendocrine cells1580.18225021339424%———
Fibroblasts2,8733.3139548296307%———
Pericytes6740.77744711283364%———
Smooth muscle cells3,2323.7280549980391%———
Endothelial cells5,9006.8055459432025%———
15 groups
๐Ÿ“Š

QC MetricsInteractive boxplots and scatter plots

๐Ÿ“ Distribution Summary

MetricMinQ1MedianMeanQ3MaxStd

๐ŸŽป Genes/Cell BOXPLOT

๐ŸŽป Counts/Cell BOXPLOT

๐ŸŽป Mito % BOXPLOT

๐ŸŽป Ribo % BOXPLOT

๐Ÿ”ฌ Genes vs Counts SCATTER

๐Ÿ—บ๏ธ

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

๐Ÿ—บ๏ธ UMAP by Group INTERACTIVE

๐Ÿงฉ

Cell CompositionCell type proportions overall and per sample

๐Ÿฅง Overall PIE

๐Ÿ“Š Per-sample STACKED BAR

๐Ÿงฌ

Marker GenesTop markers per cluster and expression heatmap

๐Ÿ”ฅ Expression Heatmap Z-SCORE

๐Ÿ“ˆ

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

๐Ÿ† Top Expressed BAR

๐Ÿ“

Data FilesDownload QC data tables

๐Ÿ“‹ Available Files

FileDescriptionAction
composition.csvComposition๐Ÿ“ฅ Download
gene_stats.csvGene Stats๐Ÿ“ฅ Download

๐Ÿ“‹ Preview: composition.csv

๐Ÿ“ฅ Full CSV
groupinggroupcountpctcategorycolor
celltypeT cells2315326.7066Immune cells#E91E63
celltypeEnterocytes2268426.1656Epithelial cells#9CCC65
celltypePlasma B cells1517717.5064Immune cells#9CCC65
celltypeMacrophages71958.2993Immune cells#66BB6A
celltypeEndothelial cells59006.8055Endothelial cells#00ACC1
celltypeSmooth muscle cells32323.7281Muscle cells#F44336
celltypeFibroblasts28733.314Stromal cells#26C6DA
celltypeMast cells25082.8929Immune cells#2E7D32
First 8 rows