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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics Tissue › sys07tis02

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP013 Tissue: sys07tis02 Generated: 2026-08-08 07:47

📁 analysis_results_v2/SP013_tis/sys07tis02/releases/r20260808-v4/modules/stats

Scope: post_qc_descriptive / Source: validated immutable release

Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.

🔬

34,409

Total Cells

🧬

16,720

Total Genes

🔷

9

Cell Types

🫀

2

Tissues

📦

N/A

Samples

N/A: Not exported by the post-QC descriptive statistics pipeline.

📊

N/A

Clusters

N/A: Not exported by the post-QC descriptive statistics pipeline.

⚡

N/A

Mito %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🧪

N/A

Ribo %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🚫

N/A

Cells Filtered

N/A: Validated Raw Count Thresholds Not Available.

✅

N/A

Pass Rate

N/A: Validated Raw Count Thresholds Not Available.

📋 Overview 📊 QC Metrics 🗺️ UMAP 🧩 Composition 🧬 Markers 📈 Gene Stats 📁 Data 2

📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬

Total Cells

34,409

Cells represented in this release

🧬

Total Genes

16,720

Genes represented in the source matrix

🔷

Cell Types

9

Annotated cell-type groups

🫀

Tissues

2

Annotated tissue groups

📦

Samples

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Clusters

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Median Genes/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

📈

Median Counts/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

⚡

Mito %

N/A

Not exported by the post-QC descriptive statistics pipeline.

🧪

Ribo %

N/A

Not exported by the post-QC descriptive statistics pipeline.

✅

Cells Passing

N/A

Validated Raw Count Thresholds Not Available.

🚫

Cells Filtered

N/A

Validated Raw Count Thresholds Not Available.

✅

Pass Rate

N/A

Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

🔷 Cell Type / Cluster Breakdown

Name	Cells	%	Med Genes	Med Counts	Med Mito%
Chromaffin cells	16,356	47.534075387253%	—	—	—
Schwann cells	43	0.12496730506554%	—	—	—
Macrophages	2,482	7.2132290970386%	—	—	—
T cells	712	2.0692260745735%	—	—	—
Fasciculata cells	8,759	25.45554942021%	—	—	—
Glomerulosa cells	791	2.2988171699265%	—	—	—
Fibroblasts	148	0.43012002673719%	—	—	—
Smooth muscle cells	379	1.1014560144148%	—	—	—
Endothelial cells	4,739	13.772559504781%	—	—	—

9 groups

📊

QC MetricsInteractive boxplots and scatter plots

📐 Distribution Summary

Metric	Min	Q1	Median	Mean	Q3	Max	Std

🎻 Genes/Cell BOXPLOT

🎻 Counts/Cell BOXPLOT

🎻 Mito % BOXPLOT

🎻 Ribo % BOXPLOT

🔬 Genes vs Counts SCATTER

🗺️

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

🗺️ UMAP by Group INTERACTIVE

🧩

Cell CompositionCell type proportions overall and per sample

🥧 Overall PIE

📊 Per-sample STACKED BAR

🧬

Marker GenesTop markers per cluster and expression heatmap

🔥 Expression Heatmap Z-SCORE

📈

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

🏆 Top Expressed BAR

📁

Data FilesDownload QC data tables

📋 Available Files

File	Description	Action
composition.csv	Composition	📥 Download
gene_stats.csv	Gene Stats	📥 Download

📋 Preview: composition.csv

grouping	group	count	pct	category	color
celltype	Chromaffin cells	16356	47.5341	Neural cells	#78909C
celltype	Fasciculata cells	8759	25.4555	Epithelial cells	#4B0082
celltype	Endothelial cells	4739	13.7726	Endothelial cells	#00ACC1
celltype	Macrophages	2482	7.2132	Immune cells	#66BB6A
celltype	Glomerulosa cells	791	2.2988	Epithelial cells	#2F4F4F
celltype	T cells	712	2.0692	Immune cells	#E91E63
celltype	Smooth muscle cells	379	1.1015	Muscle cells	#F44336
celltype	Fibroblasts	148	0.4301	Stromal cells	#26C6DA

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