ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP024
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP024/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
224,483
Cells represented in this release
🧬
Total Genes
8,970
Genes represented in the source matrix
🔷
Cell Types
54
Annotated cell-type groups
🫀
Tissues
17
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Microglia | 3,150 | 1.4032242976083% | — | — | — |
| Inhibitory neurons | 2,753 | 1.2263734893065% | — | — | — |
| Astrocytes | 2,380 | 1.0602139137485% | — | — | — |
| Oligodendrocytes | 1,831 | 0.81565196473675% | — | — | — |
| Amacrine cells | 1,208 | 0.538125381432% | — | — | — |
| Rod cells | 606 | 0.26995362677797% | — | — | — |
| Melanocytes | 514 | 0.22897056792719% | — | — | — |
| Excitatory neurons | 477 | 0.21248825078068% | — | — | — |
| Muller cells | 393 | 0.1750689361778% | — | — | — |
| Cone cells | 321 | 0.14299523794675% | — | — | — |
| T cells | 21,927 | 9.7677775154466% | — | — | — |
| Monocytes | 18,427 | 8.208639406993% | — | — | — |
| Neutrophils | 16,686 | 7.433079565045% | — | — | — |
| Macrophages | 10,736 | 4.7825447806738% | — | — | — |
| B cells | 4,219 | 1.8794296227331% | — | — | — |
| Erythroid cells | 4,043 | 1.8010272492795% | — | — | — |
| Common myeloid progenitors | 3,993 | 1.7787538477301% | — | — | — |
| Kupffer cells | 3,837 | 1.7092608348962% | — | — | — |
| Platelets | 969 | 0.43165852202617% | — | — | — |
| Pancreas islet cells | 715 | 0.31850964215553% | — | — | — |
| Cycling T cells | 525 | 0.23387071626805% | — | — | — |
| Goblet cells | 191 | 0.08508439391847% | — | — | — |
| Mucous cells | 13,844 | 6.1670594209807% | — | — | — |
| Acinar cells | 8,929 | 3.9775840486807% | — | — | — |
| Enterocytes | 8,283 | 3.6898117006633% | — | — | — |
| Proximal tubule cells | 7,132 | 3.1770779969975% | — | — | — |
| Urothelial cells | 3,626 | 1.615267080358% | — | — | — |
| Epithelial cells | 2,760 | 1.2294917655234% | — | — | — |
| Parietal cells | 2,026 | 0.90251823077917% | — | — | — |
| Keratinocytes | 1,862 | 0.82946147369734% | — | — | — |
| Hepatocytes | 1,525 | 0.6793387472548% | — | — | — |
| Pancreas ductal cells | 1,406 | 0.62632805156738% | — | — | — |
| Oviduct epithelial cells | 1,400 | 0.62365524338146% | — | — | — |
| Alveolar type 2 cells | 1,044 | 0.46506862435017% | — | — | — |
| Surface epithelial cells | 690 | 0.30737294138086% | — | — | — |
| Sertoli cells | 474 | 0.21115184668772% | — | — | — |
| Cycling epithelial cells | 324 | 0.14433164203971% | — | — | — |
| Cycling intermediate cells | 235 | 0.10468498728189% | — | — | — |
| Retinal pigmentary epithelial cells | 225 | 0.10023030697202% | — | — | — |
| Ciliated cells | 116 | 0.051674291594464% | — | — | — |
| Fibroblasts | 20,019 | 8.9178245123239% | — | — | — |
| Granulosa cells | 2,827 | 1.2593381235996% | — | — | — |
| Stellate cells | 1,137 | 0.50649715123194% | — | — | — |
| Other stromal cells | 799 | 0.35592895675842% | — | — | — |
| Mesothelial cells | 417 | 0.18576016892148% | — | — | — |
| Smooth muscle cells | 6,910 | 3.0781840941185% | — | — | — |
| Cardiomyocytes | 686 | 0.30559106925691% | — | — | — |
| Skeletal myonuclei | 47 | 0.020936997456378% | — | — | — |
| Spermatogonia | 13,678 | 6.0931117278369% | — | — | — |
| Spermatocytes | 4,287 | 1.9097214488402% | — | — | — |
| Spermatids | 1,485 | 0.66152002601533% | — | — | — |
| Endothelial cells | 12,710 | 5.6618986738417% | — | — | — |
| Intercalated cells | 2,897 | 1.2905208857686% | — | — | — |
| Principal cells | 782 | 0.34835600023164% | — | — | — |
54 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 21927 | 9.7678 | Immune cells | #8D6E63 |
| celltype | Fibroblasts | 20019 | 8.9178 | Stromal cells | #EC407A |
| celltype | Monocytes | 18427 | 8.2086 | Immune cells | #26C6DA |
| celltype | Neutrophils | 16686 | 7.4331 | Immune cells | #4CAF50 |
| celltype | Mucous cells | 13844 | 6.1671 | Epithelial cells | #F44336 |
| celltype | Spermatogonia | 13678 | 6.0931 | Germ cells | #EC407A |
| celltype | Endothelial cells | 12710 | 5.6619 | Endothelial cells | #78909C |
| celltype | Macrophages | 10736 | 4.7825 | Immune cells | #FF8A65 |
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