ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP024_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
58,183
Cells represented in this release
🧬
Total Genes
8,970
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Monocytes | 6,342 | 10.9000910919% | — | — | — |
| T cells | 4,294 | 7.3801625904474% | — | — | — |
| Kupffer cells | 3,837 | 6.5947097949573% | — | — | — |
| Macrophages | 1,764 | 3.03181341629% | — | — | — |
| Pancreas islet cells | 715 | 1.2288812883488% | — | — | — |
| B cells | 225 | 0.38671089493495% | — | — | — |
| Goblet cells | 191 | 0.32827458192255% | — | — | — |
| Mucous cells | 13,844 | 23.793891686575% | — | — | — |
| Acinar cells | 8,929 | 15.346407026107% | — | — | — |
| Enterocytes | 8,283 | 14.236117078872% | — | — | — |
| Parietal cells | 2,026 | 3.4821167695031% | — | — | — |
| Hepatocytes | 1,525 | 2.6210405101146% | — | — | — |
| Pancreas ductal cells | 1,406 | 2.4165134145713% | — | — | — |
| Cycling epithelial cells | 138 | 0.23718268222677% | — | — | — |
| Stellate cells | 1,137 | 1.9541790557379% | — | — | — |
| Fibroblasts | 54 | 0.092810614784387% | — | — | — |
| Mesothelial cells | 49 | 0.084217039341388% | — | — | — |
| Endothelial cells | 3,424 | 5.8848804633656% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Mucous cells | 13844 | 23.7939 | Epithelial cells | #F44336 |
| celltype | Acinar cells | 8929 | 15.3464 | Epithelial cells | #4CAF50 |
| celltype | Enterocytes | 8283 | 14.2361 | Epithelial cells | #FF7043 |
| celltype | Monocytes | 6342 | 10.9001 | Immune cells | #26C6DA |
| celltype | T cells | 4294 | 7.3802 | Immune cells | #8D6E63 |
| celltype | Kupffer cells | 3837 | 6.5947 | Immune cells | #00ACC1 |
| celltype | Endothelial cells | 3424 | 5.8849 | Endothelial cells | #78909C |
| celltype | Parietal cells | 2026 | 3.4821 | Epithelial cells | #AB47BC |
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