ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP113
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP113/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
64,266
Cells represented in this release
🧬
Total Genes
14,383
Genes represented in the source matrix
🔷
Cell Types
23
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 3,155 | 4.9092832913204% | — | — | — |
| B cells | 1,720 | 2.6763763109576% | — | — | — |
| Kupffer cells | 997 | 1.551364640712% | — | — | — |
| Club cells | 959 | 1.4922353966327% | — | — | — |
| T cells | 855 | 1.3304079917841% | — | — | — |
| Dendritic cells | 435 | 0.67687424143404% | — | — | — |
| Monocytes | 216 | 0.33610307160863% | — | — | — |
| Mast cells | 125 | 0.1945040923661% | — | — | — |
| Alveolar type 2 cells | 4,307 | 6.7018330065665% | — | — | — |
| Hepatocytes | 4,200 | 6.5353375035011% | — | — | — |
| Alveolar type 1 cells | 3,268 | 5.0851149908194% | — | — | — |
| Proximal tubule cells | 1,666 | 2.5923505430554% | — | — | — |
| Cholangiocytes | 646 | 1.005197149348% | — | — | — |
| Ciliated cells | 540 | 0.84025767902157% | — | — | — |
| Fibroblasts | 3,571 | 5.5565929107148% | — | — | — |
| Stellate cells | 969 | 1.507795724022% | — | — | — |
| Mesothelial cells | 115 | 0.17894376497682% | — | — | — |
| Cardiomyocytes | 6,889 | 10.719509538481% | — | — | — |
| Smooth muscle cells | 257 | 0.39990041390471% | — | — | — |
| Endothelial cells | 27,882 | 43.385304826814% | — | — | — |
| Principal cells | 949 | 1.4766750692435% | — | — | — |
| Intercalated cells | 328 | 0.51037873836866% | — | — | — |
| Ascending loop of Henle cells | 217 | 0.33765910434756% | — | — | — |
23 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Endothelial cells | 27882 | 43.3853 | Endothelial cells | #78909C |
| celltype | Cardiomyocytes | 6889 | 10.7195 | Muscle cells | #AB47BC |
| celltype | Alveolar type 2 cells | 4307 | 6.7018 | Epithelial cells | #E91E63 |
| celltype | Hepatocytes | 4200 | 6.5353 | Epithelial cells | #5C6BC0 |
| celltype | Fibroblasts | 3571 | 5.5566 | Stromal cells | #FF7043 |
| celltype | Alveolar type 1 cells | 3268 | 5.0851 | Epithelial cells | #4CAF50 |
| celltype | Macrophages | 3155 | 4.9093 | Immune cells | #29B6F6 |
| celltype | B cells | 1720 | 2.6764 | Immune cells | #FFA726 |
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