Exact Table S1A source record ยท rank 5/41

Domestic cattle RNA-seq sources

Bos taurus ยท Cetartiodactyla

Tissue replicate counts are reproduced from the paperโ€™s mammalian RNA-seq inventory. Accession rows below are reconciled directly to downloaded GEO SOFT or ENA records.

Inspect 14 source records โ†’ Open Igf1 gene profile โ†’ Open LACA content โ†’ Paper source โ†—
Study samples
14
Source datasets
2
Present tissues
4
Table S1A tissue inventory

Six tissues, exact replicate counts

Choose a present tissue to filter the accession table.

Brain

4 replicates

Cerebellum

0 replicates

Not sampled

Heart

2 replicates

Kidney

4 replicates

Liver

4 replicates

Testis

0 replicates

Not sampled

Icons are illustrative atlas graphics, not study specimen images.

Processed availability

What can be analyzed locally

Each route describes its own value type and permitted analytical scope.

GSE43013 ready

GSE43013 native expression

Within-species exploratory PCA/QC of the source-native expression matrix.

Native expression values and PCA coordinates are not cross-species or cross-dataset comparable. Open GSE43013 analysis โ†’
Downloaded catalog records

Paper and repository sources

GEO SOFT GSE41637

Evolutionary dynamics of gene and isoform regulation in mammalian tissues

Catalog samples
134
Selected here
8
Processed status
source-only
Open repository record โ†—
GEO SOFT GSE43013

Gene Expression Defines Natural Changes in Mammalian Lifespan

Catalog samples
141
Selected here
140
Processed status
native-expression
Open repository record โ†—
SOFT / ENA evidence

14 selected sample records

Every row links to its original repository record when the source catalog supplies one.

# Tissue Dataset / accession Source title Library Linked records
03 Brain GSE41637 GSM1020720 โ†— cow_a_brain cow_brain RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766894 โ†— SRA SRX196344 โ†—
04 Brain GSE41637 GSM1020729 โ†— cow_b_brain cow_brain RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766903 โ†— SRA SRX196353 โ†—
01 Brain GSE43013 GSM1055084 โ†— bta.br.1 Bos taurus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831951 โ†— SRA SRX211674 โ†—
02 Brain GSE43013 GSM1055085 โ†— bta.br.2 Bos taurus_brain RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831952 โ†— SRA SRX211675 โ†—
05 Heart GSE41637 GSM1020722 โ†— cow_a_heart cow_heart RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766896 โ†— SRA SRX196346 โ†—
06 Heart GSE41637 GSM1020731 โ†— cow_b_heart cow_heart RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766905 โ†— SRA SRX196355 โ†—
09 Kidney GSE41637 GSM1020723 โ†— cow_a_kidney cow_kidney RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766897 โ†— SRA SRX196347 โ†—
10 Kidney GSE41637 GSM1020732 โ†— cow_b_kidney cow_kidney RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766906 โ†— SRA SRX196356 โ†—
07 Kidney GSE43013 GSM1055039 โ†— bta.kd.1 Bos taurus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831906 โ†— SRA SRX211629 โ†—
08 Kidney GSE43013 GSM1055040 โ†— bta.kd.2 Bos taurus_kidney RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831907 โ†— SRA SRX211630 โ†—
13 Liver GSE41637 GSM1020724 โ†— cow_a_liver cow_liver RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766898 โ†— SRA SRX196348 โ†—
14 Liver GSE41637 GSM1020733 โ†— cow_b_liver cow_liver RNA-Seq Illumina HiSeq 2000
BioSample SAMN01766907 โ†— SRA SRX196357 โ†—
11 Liver GSE43013 GSM1054989 โ†— bta.lv.1 Bos taurus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831856 โ†— SRA SRX211579 โ†—
12 Liver GSE43013 GSM1054990 โ†— bta.lv.2 Bos taurus_liver RNA-Seq Illumina Genome Analyzer IIx
BioSample SAMN01831857 โ†— SRA SRX211580 โ†—
Exact catalog linkage

LACA record status

Back to all 41 mammals โ†’ Profiles gallery โ†’