๐พ
Species
Thirteen-lined ground squirrel
Ictidomys tridecemlineatus
Rodents
Species Overview
A small, slender ground squirrel native to the Great Plains of central North America. Adults weigh 110โ270 g. Their most recognizable feature is 13 alternating dark-brown and tan longitudinal stripes along the back, with the dark stripes containing light spots. They inhabit short-grass prairies, golf courses, and mowed roadsides. Solitary and diurnal, they feed on seeds, grass, insects, and small vertebrates. They are obligate hibernators, spending October through March/April in deep torpor during which heart rate drops from ~200 to ~5 bpm and body temperature can fall below 5ยฐC. They excavate deep burrow systems (up to 2 m deep). Females produce one litter of 6โ13 pups after a ~28-day gestation. This species is extensively used in hibernation physiology research, studies of cardiac ischemia tolerance (their hearts resist damage during hibernation), and neuroprotection. The genome has been sequenced (2n=36). Lifespan: 4โ5 years. They play an important ecological role as prey for raptors and small carnivores. IUCN: Least Concern.
Integrated UMAP Atlas & Gene Explorer
Provisional atlas release
This provisional release contains 10,000 retina cells from a single published dataset. Cell-type labels follow the source publication's annotations and have not yet been standardized to the LACA cell-type vocabulary. Gene-expression search is unavailable for this release.
10,000 cells ยท Retina ยท provisional annotations Loading UMAP for Thirteen-lined ground squirrelโฆ
Cell Distribution โ WebGL
Cells: 0Types: 0Zoom: 1.0x
โ UMAP_1
โ UMAP_2
Loading...
Cell Types
Loading cell types...
โ
Tissues
โ
Systems
โ
Samples
0
Total Cells
0
Cell Types
View by System
Biological System Atlas1Systems
View by Tissue
Tissue-Level Cell Distribution1Tissues
View by Cell Type
Cellular Composition Explorer91Cell Types

Adrenergic neurons
โ

Adventitial cells
โ

Amacrine cells
โ

Bipolar cells
โ

Cholangiocytes
โ

Cone cells
โ

Corticotropes
โ

Cycling basal cells
โ

Cycling Cells
โ

Cycling ciliated cells
โ

Cycling epithelial cells
โ

Cycling glandular cells
โ

Cycling intermediate cells
โ

Cycling luminal epithelial cells
โ

Cycling stereociliated cells
โ

Descending limb of loop of Henle cells
โ

Effector chondrocytes
โ

Endoneurial cells
โ

Enteric neuronal progenitor cells
โ

Enteric neurons
โ

Eosinophils
โ

Ependymal cells
โ

Epineurial cells
โ

Epithelial cells
โ

Fasciculata cells
โ

Fibrocartilage chondrocytes
โ

Follicular cells
โ

Folliculostellate cells
โ

Ganglion cells
โ

Gastric epithelial cells
โ

Glandular cells
โ

Glial cells
โ

Glomerulosa cells
โ

Gonadotropes
โ

Granule cells
โ

Granulocytes
โ

Granulosa cells
โ

Homeostatic chondrocytes
โ

Horizontal cells
โ

Hypertrophic chondrocytes
โ

Inflammatory chondrocytes
โ

Lactotropes
โ

Luminal epithelial cells
โ

Melanotropes
โ

Mesenchymal cells
โ

Motor neurons
โ

Muller cells
โ

Myotendinous junctions
โ

Natural killer cells
โ

Natural killer T cells
โ

Neural crest cells
โ

Neural progenitor cells
โ

Neuromuscular junctions
โ

Neurons
โ

Oocytes
โ

Osteoblasts
โ

Osteoclasts
โ

Other stromal cells
โ

Oviduct epithelial cells
โ

Perineurial cells
โ

Pinealocytes
โ

Pre-hypertrophic chondrocytes
โ

Pre-inflammatory chondrocytes
โ

Precursor fibrocartilage chondrocytes
โ

Principal like cells
โ

Progenitor-like epithelial cells
โ

Proliferative chondrocytes
โ

Prostate progenitor cells
โ

Pseudostratified columnar cells
โ

Radial glial cells
โ

Regulatory chondrocytes
โ

Reparative chondrocytes
โ

Retinal pigmentary epithelial cells
โ

Rod cells
โ

Satellite cells
โ

Seminal vesicle epithelial cells
โ

Serous cells
โ

Skeletal myonuclei
โ

Somatotropes
โ

Squamous cells
โ

Stereociliated cells
โ

Supporting cells of vestibular epithelium
โ

Surface epithelial cells
โ

T_NKT cells
โ

Taste cells
โ

Tendon cells
โ

Theca cells
โ

Thyrotropes
โ

Type I myonuclei
โ

Type II myonuclei
โ

Vestibular dark cells
โ
Related Species in Rodents
Arctic ground squirrel
Urocitellus parryii
Thirteen-lined ground squirrel
Ictidomys tridecemlineatus
Groundhog
Marmota monax
House mouse
Mus musculus
Norway rat
Rattus norvegicus
Mongolian gerbil
Meriones unguiculatus
Baird's deer mouse
Peromyscus maniculatus
Oldfield mouse
Peromyscus polionotus
Hispid cotton rat
Sigmodon hispidus
Golden hamster
Mesocricetus auratus
Chinese hamster
Cricetulus griseus
Galilee blind mole rat
Spalax galili
Guinea pig
Cavia porcellus
Long-tailed chinchilla
Chinchilla lanigera
Naked mole rat
Heterocephalus glaber
Cell Type
Expression
Coords

