Three-spined stickleback ๐Ÿพ Species
Tissues 0
No tissue data available
Species / Fishes / Three-spined stickleback

Three-spined stickleback

Gasterosteus aculeatus
Fishes
8 yrs
Max Lifespan
3 g
Adult Weight
SP460
Species ID
1
Tissues
Statistics Analysis

Species Overview

A small fish (family Gasterosteidae) with a circumpolar distribution in coastal marine, brackish, and freshwater habitats of the Northern Hemisphere. Adults measure 4โ€“8 cm and weigh 1โ€“5 g. They have a streamlined body lacking scales, replaced by lateral bony plates, and three prominent dorsal spines (plus pelvic spines) for predator defense. Coloration is silver-green; breeding males develop brilliant red throats and blue eyes. After the last ice age (~12,000 years ago), marine populations colonized thousands of freshwater lakes and streams, evolving parallel adaptations (loss of armor plates, pelvic spines, and pigmentation)โ€”providing one of the best-documented examples of parallel evolution and adaptive radiation. The Eda gene (ectodysplasin) controls plate number. Males build nests from plant material, glued with kidney secretions, and perform a zigzag courtship dance. They provide paternal care (guarding and fanning eggs). Their genome is sequenced (2n=42). They are a premier model in evolutionary biology, behavioral ecology, and genomics of adaptation. Lifespan: 2โ€“4 years. IUCN: Least Concern.

Integrated UMAP Atlas & Gene Explorer

Provisional atlas release This provisional release contains 8,891 cells from a single published whole-body landscape dataset. Cell-type labels follow the source publication's annotations and have not yet been standardized to the LACA cell-type vocabulary. Gene-expression search is unavailable for this release.
8,891 cells ยท Landscape ยท provisional annotations
Data processing Original author labels Methods Per-dataset records
Size
Opacity
Map
Loading UMAP for Three-spined sticklebackโ€ฆ
Cell Distribution โ€” WebGL
Cells: 0Types: 0Zoom: 1.0x
โ†’ UMAP_1
โ†‘ UMAP_2
0
Max
Loading...

Cell Types

Loading cell types...
โ€”
Tissues
โ€”
Systems
โ€”
Samples
0
Total Cells
0
Cell Types

View by System

Biological System Atlas
2Systems

View by Cell Type

Cellular Composition Explorer
91Cell Types
Adrenergic neurons
Adrenergic neurons
Abbr: AdrenNeuMajor: Neural cells
โ†’
Adventitial cells
Adventitial cells
Abbr: AdventiMajor: Stromal cells
โ†’
Amacrine cells
Amacrine cells
Abbr: AmacrineMajor: Neural cells
โ†’
Bipolar cells
Bipolar cells
Abbr: BipolarMajor: Neural cells
โ†’
Cholangiocytes
Cholangiocytes
Abbr: CholMajor: Epithelial cellโ€ฆ
โ†’
Cone cells
Cone cells
Abbr: ConeMajor: Neural cells
โ†’
Corticotropes
Corticotropes
Abbr: CorticoMajor: Epithelial cellโ€ฆ
โ†’
Cycling basal cells
Cycling basal cells
Abbr: CycBasalMajor: Epithelial cellโ€ฆ
โ†’
Cycling Cells
Cycling Cells
Abbr: CycMajor: Epithelial cellโ€ฆ
โ†’
Cycling ciliated cells
Cycling ciliated cells
Abbr: CycCiliMajor: Epithelial cellโ€ฆ
โ†’
Cycling epithelial cells
Cycling epithelial cells
Abbr: CycEpiMajor: Epithelial cellโ€ฆ
โ†’
Cycling glandular cells
Cycling glandular cells
Abbr: CycGlandMajor: Epithelial cellโ€ฆ
โ†’
Cycling intermediate cells
Cycling intermediate cells
Abbr: CycIMMajor: Epithelial cellโ€ฆ
โ†’
Cycling luminal epithelial cells
Cycling luminal epithelial cells
Abbr: CycLumiEpiMajor: Epithelial cellโ€ฆ
โ†’
Cycling stereociliated cells
Cycling stereociliated cells
Abbr: CycStereoMajor: Epithelial cellโ€ฆ
โ†’
Descending limb of loop of Henle cells
Descending limb of loop of Henle cells
Abbr: DesLOHMajor: Epithelial cellโ€ฆ
โ†’
Effector chondrocytes
Effector chondrocytes
Abbr: ECMajor: Stromal cells
โ†’
Endoneurial cells
Endoneurial cells
Abbr: EndoneurialMajor: Stromal cells
โ†’
Enteric neuronal progenitor cells
Enteric neuronal progenitor cells
Abbr: ENPCMajor: Neural cells
โ†’
Enteric neurons
Enteric neurons
Abbr: EntNeuMajor: Neural cells
โ†’
Eosinophils
Eosinophils
Abbr: EosMajor: Immune cells
โ†’
Ependymal cells
Ependymal cells
Abbr: EpendMajor: Epithelial cellโ€ฆ
โ†’
Epineurial cells
Epineurial cells
Abbr: EpineurialMajor: Stromal cells
โ†’
Epithelial cells
Epithelial cells
Abbr: EpiMajor: Epithelial cellโ€ฆ
โ†’
Fasciculata cells
Fasciculata cells
Abbr: FasciculataMajor: Epithelial cellโ€ฆ
โ†’
Fibrocartilage chondrocytes
Fibrocartilage chondrocytes
Abbr: FCMajor: Stromal cells
โ†’
Follicular cells
Follicular cells
Abbr: FollicularMajor: Epithelial cellโ€ฆ
โ†’
Folliculostellate cells
Folliculostellate cells
Abbr: FolliculoMajor: Stromal cells
โ†’
Ganglion cells
Ganglion cells
Abbr: GanglionMajor: Neural cells
โ†’
Gastric epithelial cells
Gastric epithelial cells
Abbr: GpcMajor: Epithelial cellโ€ฆ
โ†’
Glandular cells
Glandular cells
Abbr: GlandularMajor: Epithelial cellโ€ฆ
โ†’
Glial cells
Glial cells
Abbr: GlialMajor: Neural cells
โ†’
Glomerulosa cells
Glomerulosa cells
Abbr: GlomerulosaMajor: Epithelial cellโ€ฆ
โ†’
Gonadotropes
Gonadotropes
Abbr: GonadoMajor: Epithelial cellโ€ฆ
โ†’
Granule cells
Granule cells
Abbr: GranuleMajor: Neural cells
โ†’
Granulocytes
Granulocytes
Abbr: GranuloMajor: Immune cells
โ†’
Granulosa cells
Granulosa cells
Abbr: GranulosaMajor: Stromal cells
โ†’
Homeostatic chondrocytes
Homeostatic chondrocytes
Abbr: HomCMajor: Stromal cells
โ†’
Horizontal cells
Horizontal cells
Abbr: HorizontalMajor: Neural cells
โ†’
Hypertrophic chondrocytes
Hypertrophic chondrocytes
Abbr: HTCMajor: Stromal cells
โ†’
Inflammatory chondrocytes
Inflammatory chondrocytes
Abbr: InfCMajor: Stromal cells
โ†’
Lactotropes
Lactotropes
Abbr: LactoMajor: Epithelial cellโ€ฆ
โ†’
Luminal epithelial cells
Luminal epithelial cells
Abbr: LumiEpiMajor: Epithelial cellโ€ฆ
โ†’
Melanotropes
Melanotropes
Abbr: MelanoMajor: Epithelial cellโ€ฆ
โ†’
Mesenchymal cells
Mesenchymal cells
Abbr: MesMajor: Stromal cells
โ†’
Motor neurons
Motor neurons
Abbr: MotorNeuMajor: Neural cells
โ†’
Muller cells
Muller cells
Abbr: MullerMajor: Neural cells
โ†’
Myotendinous junctions
Myotendinous junctions
Abbr: MTJMajor: Muscle cells
โ†’
Natural killer cells
Natural killer cells
Abbr: NKMajor: Immune cells
โ†’
Natural killer T cells
Natural killer T cells
Abbr: NKTMajor: Immune cells
โ†’
Neural crest cells
Neural crest cells
Abbr: NCCMajor: Neural cells
โ†’
Neural progenitor cells
Neural progenitor cells
Abbr: NpcMajor: Neural cells
โ†’
Neuromuscular junctions
Neuromuscular junctions
Abbr: NMJMajor: Muscle cells
โ†’
Neurons
Neurons
Abbr: NeuMajor: Neural cells
โ†’
Oocytes
Oocytes
Abbr: OocytesMajor: Germ cells
โ†’
Osteoblasts
Osteoblasts
Abbr: OblMajor: Stromal cells
โ†’
Osteoclasts
Osteoclasts
Abbr: OclMajor: Stromal cells
โ†’
Other stromal cells
Other stromal cells
Abbr: StromalXMajor: Stromal cells
โ†’
Oviduct epithelial cells
Oviduct epithelial cells
Abbr: OvidEpiMajor: Epithelial cellโ€ฆ
โ†’
Perineurial cells
Perineurial cells
Abbr: PerineurialMajor: Stromal cells
โ†’
Pinealocytes
Pinealocytes
Abbr: PinealocyteMajor: Epithelial cellโ€ฆ
โ†’
Pre-hypertrophic chondrocytes
Pre-hypertrophic chondrocytes
Abbr: preHTCMajor: Stromal cells
โ†’
Pre-inflammatory chondrocytes
Pre-inflammatory chondrocytes
Abbr: preInfCMajor: Stromal cells
โ†’
Precursor fibrocartilage chondrocytes
Precursor fibrocartilage chondrocytes
Abbr: preFCMajor: Stromal cells
โ†’
Principal like cells
Principal like cells
Abbr: PrinLikeMajor: Epithelial cellโ€ฆ
โ†’
Progenitor-like epithelial cells
Progenitor-like epithelial cells
Abbr: ProgLikeEpiMajor: Epithelial cellโ€ฆ
โ†’
Proliferative chondrocytes
Proliferative chondrocytes
Abbr: ProCMajor: Stromal cells
โ†’
Prostate progenitor cells
Prostate progenitor cells
Abbr: ProProgEpiMajor: Epithelial cellโ€ฆ
โ†’
Pseudostratified columnar cells
Pseudostratified columnar cells
Abbr: PseudoColMajor: Epithelial cellโ€ฆ
โ†’
Radial glial cells
Radial glial cells
Abbr: RGCMajor: Neural cells
โ†’
Regulatory chondrocytes
Regulatory chondrocytes
Abbr: RegCMajor: Stromal cells
โ†’
Reparative chondrocytes
Reparative chondrocytes
Abbr: RepCMajor: Stromal cells
โ†’
Retinal pigmentary epithelial cells
Retinal pigmentary epithelial cells
Abbr: RPEMajor: Epithelial cellโ€ฆ
โ†’
Rod cells
Rod cells
Abbr: RodMajor: Neural cells
โ†’
Satellite cells
Satellite cells
Abbr: SatelliteMajor: Muscle cells
โ†’
Seminal vesicle epithelial cells
Seminal vesicle epithelial cells
Abbr: SvecMajor: Epithelial cellโ€ฆ
โ†’
Serous cells
Serous cells
Abbr: SerousMajor: Epithelial cellโ€ฆ
โ†’
Skeletal myonuclei
Skeletal myonuclei
Abbr: SkeleMyoMajor: Muscle cells
โ†’
Somatotropes
Somatotropes
Abbr: SomatoMajor: Epithelial cellโ€ฆ
โ†’
Squamous cells
Squamous cells
Abbr: SquamousMajor: Epithelial cellโ€ฆ
โ†’
Stereociliated cells
Stereociliated cells
Abbr: StereoCiliMajor: Epithelial cellโ€ฆ
โ†’
Supporting cells of vestibular epithelium
Supporting cells of vestibular epithelium
Abbr: SupportMajor: Epithelial cellโ€ฆ
โ†’
Surface epithelial cells
Surface epithelial cells
Abbr: SurfaceEpiMajor: Epithelial cellโ€ฆ
โ†’
T_NKT cells
T_NKT cells
Abbr: T_NKTMajor: Immune cells
โ†’
Taste cells
Taste cells
Abbr: TasteMajor: Epithelial cellโ€ฆ
โ†’
Tendon cells
Tendon cells
Abbr: TendonMajor: Stromal cells
โ†’
Theca cells
Theca cells
Abbr: ThecaMajor: Stromal cells
โ†’
Thyrotropes
Thyrotropes
Abbr: ThyroMajor: Epithelial cellโ€ฆ
โ†’
Type I myonuclei
Type I myonuclei
Abbr: Myonuc_IMajor: Muscle cells
โ†’
Type II myonuclei
Type II myonuclei
Abbr: Myonuc_IIMajor: Muscle cells
โ†’
Vestibular dark cells
Vestibular dark cells
Abbr: VDCMajor: Epithelial cellโ€ฆ
โ†’

Related Species in Fishes

West african lungfish
Tissues 1
Whole brain
West african lungfish
Protopterus annectens
Zebrafish
Tissues 13
Caudal fin Gill Heart Kidney Liver Ovary PBMC Retina and pigment epithelium Skeletal muscle Skin Spleen Testis Whole brain
Zebrafish
Danio rerio
Common carp
Tissues 1
Whole brain
Common carp
Cyprinus carpio
Goldfish
Tissues 1
Whole brain
Goldfish
Carassius auratus
Grass carp
Tissues 1
Whole brain
Grass carp
Ctenopharyngodon idella
Blunt snout bream
Tissues 1
Whole brain
Blunt snout bream
Megalobrama amblycephala
Pond loach
Tissues 1
Whole brain
Pond loach
Misgurnus anguillicaudatus
Mexican tetra
Tissues 1
Whole brain
Mexican tetra
Astyanax mexicanus
Rainbow trout
Tissues 1
Whole brain
Rainbow trout
Oncorhynchus mykiss
Northern pike
Tissues 1
Whole brain
Northern pike
Esox lucius
Asian swamp eel
Tissues 1
Whole brain
Asian swamp eel
Monopterus albus
Zig-zag eel
Tissues 1
Whole brain
Zig-zag eel
Mastacembelus armatus
Three-spined stickleback
Tissues
No tissue information available
Three-spined stickleback
Gasterosteus aculeatus
Ocellaris clownfish
Tissues 1
Whole brain
Ocellaris clownfish
Amphiprion ocellaris
Orange clownfish
Tissues 1
Whole brain
Orange clownfish
Amphiprion percula
Largemouth bass
Tissues 1
Whole brain
Largemouth bass
Micropterus salmoides
Chinese perch
Tissues 1
Whole brain
Chinese perch
Siniperca chuatsi
Northern snakehead
Tissues 1
Whole brain
Northern snakehead
Channa argus
Climbing perch
Tissues 1
Whole brain
Climbing perch
Anabas testudineus
Siamese fighting fish
Tissues 1
Whole brain
Siamese fighting fish
Betta splendens
Barramundi
Tissues 1
Whole brain
Barramundi
Lates calcarifer
Brown-marbled grouper
Tissues 1
Whole brain
Brown-marbled grouper
Epinephelus fuscoguttatus
Giant grouper
Tissues 1
Whole brain
Giant grouper
Epinephelus lanceolatus
Leopard coral trout
Tissues 1
Whole brain
Leopard coral trout
Plectropomus leopardus
Live sharksucker
Tissues 1
Whole brain
Live sharksucker
Echeneis naucrates
Mchenga conophoros
Tissues 1
Whole brain
Mchenga conophoros
Mchenga conophoros
Nile tilapia
Tissues
No tissue information available
Nile tilapia
Oreochromis niloticus
Copperband butterflyfish
Tissues 1
Whole brain
Copperband butterflyfish
Chelmon rostratus
Mandarinfish
Tissues 1
Whole brain
Mandarinfish
Synchiropus splendidus
Yellowfin seabream
Tissues 1
Whole brain
Yellowfin seabream
Acanthopagrus latus
Jewelled blenny
Tissues 1
Whole brain
Jewelled blenny
Salarias fasciatus
Turbot
Tissues 1
Whole brain
Turbot
Scophthalmus maximus
Green spotted puffer
Tissues 1
Whole brain
Green spotted puffer
Tetraodon nigroviridis
Guppy
Tissues 1
Whole brain
Guppy
Poecilia reticulata
Western mosquitofish
Tissues 1
Whole brain
Western mosquitofish
Gambusia affinis
Turquoise killifish
Tissues
No tissue information available
Turquoise killifish
Nothobranchius furzeri
Southern platyfish
Tissues 1
Whole brain
Southern platyfish
Xiphophorus maculatus
Green swordtail
Tissues 1
Whole brain
Green swordtail
Xiphophorus hellerii
Japanese medaka
Tissues 1
Whole brain
Japanese medaka
Oryzias latipes
Yellow catfish
Tissues 1
Whole brain
Yellow catfish
Tachysurus fulvidraco
Asian arowana
Tissues 1
Whole brain
Asian arowana
Scleropages formosus
Boeseman's rainbowfish
Tissues 1
Whole brain
Boeseman's rainbowfish
Melanotaenia boesemani
Alligator gar
Tissues 1
Whole brain
Alligator gar
Atractosteus spatula
Senegal bichir
Tissues 1
Whole brain
Senegal bichir
Polypterus senegalus
Reedfish
Tissues 1
Whole brain
Reedfish
Erpetoichthys calabaricus
Whitespotted bamboo shark
Tissues 1
Whole brain
Whitespotted bamboo shark
Chiloscyllium plagiosum
Small-spotted catshark
Tissues
No tissue information available
Small-spotted catshark
Scyliorhinus canicula
Sea lamprey
Tissues 1
Whole brain
Sea lamprey
Petromyzon marinus
โ† Back to Species Database
Cell Type
Expression
Coords